222 related articles for article (PubMed ID: 24876377)
1. PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data.
Wang C; Evans JM; Bhagwate AV; Prodduturi N; Sarangi V; Middha M; Sicotte H; Vedell PT; Hart SN; Oliver GR; Kocher JP; Maurer MJ; Novak AJ; Slager SL; Cerhan JR; Asmann YW
Bioinformatics; 2014 Sep; 30(18):2678-80. PubMed ID: 24876377
[TBL] [Abstract][Full Text] [Related]
2. Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets.
Samadian S; Bruce JP; Pugh TJ
PLoS Comput Biol; 2018 Mar; 14(3):e1006080. PubMed ID: 29590101
[TBL] [Abstract][Full Text] [Related]
3. Identification of copy number variants from exome sequence data.
Samarakoon PS; Sorte HS; Kristiansen BE; Skodje T; Sheng Y; Tjønnfjord GE; Stadheim B; Stray-Pedersen A; Rødningen OK; Lyle R
BMC Genomics; 2014 Aug; 15(1):661. PubMed ID: 25102989
[TBL] [Abstract][Full Text] [Related]
4. An evaluation of copy number variation detection tools for cancer using whole exome sequencing data.
Zare F; Dow M; Monteleone N; Hosny A; Nabavi S
BMC Bioinformatics; 2017 May; 18(1):286. PubMed ID: 28569140
[TBL] [Abstract][Full Text] [Related]
5. FishingCNV: a graphical software package for detecting rare copy number variations in exome-sequencing data.
Shi Y; Majewski J
Bioinformatics; 2013 Jun; 29(11):1461-2. PubMed ID: 23539306
[TBL] [Abstract][Full Text] [Related]
6. CLAMMS: a scalable algorithm for calling common and rare copy number variants from exome sequencing data.
Packer JS; Maxwell EK; O'Dushlaine C; Lopez AE; Dewey FE; Chernomorsky R; Baras A; Overton JD; Habegger L; Reid JG
Bioinformatics; 2016 Jan; 32(1):133-5. PubMed ID: 26382196
[TBL] [Abstract][Full Text] [Related]
7. Detection of internal exon deletion with exon Del.
Guo Y; Zhao S; Lehmann BD; Sheng Q; Shaver TM; Stricker TP; Pietenpol JA; Shyr Y
BMC Bioinformatics; 2014 Oct; 15(1):332. PubMed ID: 25322818
[TBL] [Abstract][Full Text] [Related]
8. Anaconda: AN automated pipeline for somatic COpy Number variation Detection and Annotation from tumor exome sequencing data.
Gao J; Wan C; Zhang H; Li A; Zang Q; Ban R; Ali A; Yu Z; Shi Q; Jiang X; Zhang Y
BMC Bioinformatics; 2017 Oct; 18(1):436. PubMed ID: 28974218
[TBL] [Abstract][Full Text] [Related]
9. An evaluation of copy number variation detection tools from whole-exome sequencing data.
Tan R; Wang Y; Kleinstein SE; Liu Y; Zhu X; Guo H; Jiang Q; Allen AS; Zhu M
Hum Mutat; 2014 Jul; 35(7):899-907. PubMed ID: 24599517
[TBL] [Abstract][Full Text] [Related]
10. Evaluation of somatic copy number estimation tools for whole-exome sequencing data.
Nam JY; Kim NK; Kim SC; Joung JG; Xi R; Lee S; Park PJ; Park WY
Brief Bioinform; 2016 Mar; 17(2):185-92. PubMed ID: 26210357
[TBL] [Abstract][Full Text] [Related]
11. A robust model for read count data in exome sequencing experiments and implications for copy number variant calling.
Plagnol V; Curtis J; Epstein M; Mok KY; Stebbings E; Grigoriadou S; Wood NW; Hambleton S; Burns SO; Thrasher AJ; Kumararatne D; Doffinger R; Nejentsev S
Bioinformatics; 2012 Nov; 28(21):2747-54. PubMed ID: 22942019
[TBL] [Abstract][Full Text] [Related]
12. A Sparse Model Based Detection of Copy Number Variations From Exome Sequencing Data.
Duan J; Wan M; Deng HW; Wang YP
IEEE Trans Biomed Eng; 2016 Mar; 63(3):496-505. PubMed ID: 26258935
[TBL] [Abstract][Full Text] [Related]
13. Exome sequence read depth methods for identifying copy number changes.
Kadalayil L; Rafiq S; Rose-Zerilli MJ; Pengelly RJ; Parker H; Oscier D; Strefford JC; Tapper WJ; Gibson J; Ennis S; Collins A
Brief Bioinform; 2015 May; 16(3):380-92. PubMed ID: 25169955
[TBL] [Abstract][Full Text] [Related]
14. Assessing the reproducibility of exome copy number variations predictions.
Hong CS; Singh LN; Mullikin JC; Biesecker LG
Genome Med; 2016 Aug; 8(1):82. PubMed ID: 27503473
[TBL] [Abstract][Full Text] [Related]
15. DECoN: A Detection and Visualization Tool for Exonic Copy Number Variants.
Fowler A
Methods Mol Biol; 2022; 2493():77-88. PubMed ID: 35751810
[TBL] [Abstract][Full Text] [Related]
16. Exome copy number variation detection: Use of a pool of unrelated healthy tissue as reference sample.
Wenric S; Sticca T; Caberg JH; Josse C; Fasquelle C; Herens C; Jamar M; Max S; Gothot A; Caers J; Bours V
Genet Epidemiol; 2017 Jan; 41(1):35-40. PubMed ID: 27862228
[TBL] [Abstract][Full Text] [Related]
17. cnvScan: a CNV screening and annotation tool to improve the clinical utility of computational CNV prediction from exome sequencing data.
Samarakoon PS; Sorte HS; Stray-Pedersen A; Rødningen OK; Rognes T; Lyle R
BMC Genomics; 2016 Jan; 17():51. PubMed ID: 26764020
[TBL] [Abstract][Full Text] [Related]
18. HCMMCNVs: hierarchical clustering mixture model of copy number variants detection using whole exome sequencing technology.
Song C; Su SC; Huo Z; Vural S; Galvin JE; Chang LC
Bioinformatics; 2021 Sep; 37(18):3026-3028. PubMed ID: 33714997
[TBL] [Abstract][Full Text] [Related]
19. Atlas-CNV: a validated approach to call single-exon CNVs in the eMERGESeq gene panel.
Chiang T; Liu X; Wu TJ; Hu J; Sedlazeck FJ; White S; Schaid D; Andrade M; Jarvik GP; Crosslin D; Stanaway I; Carrell DS; Connolly JJ; Hakonarson H; Groopman EE; Gharavi AG; Fedotov A; Bi W; Leduc MS; Murdock DR; Jiang Y; Meng L; Eng CM; Wen S; Yang Y; Muzny DM; Boerwinkle E; Salerno W; Venner E; Gibbs RA
Genet Med; 2019 Sep; 21(9):2135-2144. PubMed ID: 30890783
[TBL] [Abstract][Full Text] [Related]
20. A comprehensive framework for detecting copy number variants from single nucleotide polymorphism data: 'rCNV', a versatile r package for paralogue and CNV detection.
Karunarathne P; Zhou Q; Schliep K; Milesi P
Mol Ecol Resour; 2023 Nov; 23(8):1772-1789. PubMed ID: 37515483
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]