276 related articles for article (PubMed ID: 24885295)
1. A comparison of performance of plant miRNA target prediction tools and the characterization of features for genome-wide target prediction.
Srivastava PK; Moturu TR; Pandey P; Baldwin IT; Pandey SP
BMC Genomics; 2014 May; 15(1):348. PubMed ID: 24885295
[TBL] [Abstract][Full Text] [Related]
2. SeqTar: an effective method for identifying microRNA guided cleavage sites from degradome of polyadenylated transcripts in plants.
Zheng Y; Li YF; Sunkar R; Zhang W
Nucleic Acids Res; 2012 Feb; 40(4):e28. PubMed ID: 22140118
[TBL] [Abstract][Full Text] [Related]
3. sPARTA: a parallelized pipeline for integrated analysis of plant miRNA and cleaved mRNA data sets, including new miRNA target-identification software.
Kakrana A; Hammond R; Patel P; Nakano M; Meyers BC
Nucleic Acids Res; 2014 Oct; 42(18):e139. PubMed ID: 25120269
[TBL] [Abstract][Full Text] [Related]
4. Protocols for miRNA Target Prediction in Plants.
Sablok G; Yang K; Wen X
Methods Mol Biol; 2019; 1970():65-73. PubMed ID: 30963488
[TBL] [Abstract][Full Text] [Related]
5. psRNATarget: a plant small RNA target analysis server.
Dai X; Zhao PX
Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W155-9. PubMed ID: 21622958
[TBL] [Abstract][Full Text] [Related]
6. MiRTif: a support vector machine-based microRNA target interaction filter.
Yang Y; Wang YP; Li KB
BMC Bioinformatics; 2008 Dec; 9 Suppl 12(Suppl 12):S4. PubMed ID: 19091027
[TBL] [Abstract][Full Text] [Related]
7. A Distributed Classifier for MicroRNA Target Prediction with Validation Through TCGA Expression Data.
Ghoshal A; Zhang J; Roth MA; Xia KM; Grama AY; Chaterji S
IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(4):1037-1051. PubMed ID: 29993641
[TBL] [Abstract][Full Text] [Related]
8. Prediction of plant pre-microRNAs and their microRNAs in genome-scale sequences using structure-sequence features and support vector machine.
Meng J; Liu D; Sun C; Luan Y
BMC Bioinformatics; 2014 Dec; 15(1):423. PubMed ID: 25547126
[TBL] [Abstract][Full Text] [Related]
9. Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing.
Kim B; Yu HJ; Park SG; Shin JY; Oh M; Kim N; Mun JH
BMC Plant Biol; 2012 Nov; 12():218. PubMed ID: 23163954
[TBL] [Abstract][Full Text] [Related]
10. Identifying microRNA targets in different gene regions.
Xu W; San Lucas A; Wang Z; Liu Y
BMC Bioinformatics; 2014; 15 Suppl 7(Suppl 7):S4. PubMed ID: 25077573
[TBL] [Abstract][Full Text] [Related]
11. Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets.
Wang XJ; Reyes JL; Chua NH; Gaasterland T
Genome Biol; 2004; 5(9):R65. PubMed ID: 15345049
[TBL] [Abstract][Full Text] [Related]
12. PAREameters: a tool for computational inference of plant miRNA-mRNA targeting rules using small RNA and degradome sequencing data.
Thody J; Moulton V; Mohorianu I
Nucleic Acids Res; 2020 Mar; 48(5):2258-2270. PubMed ID: 31943065
[TBL] [Abstract][Full Text] [Related]
13. Mirinho: An efficient and general plant and animal pre-miRNA predictor for genomic and deep sequencing data.
Higashi S; Fournier C; Gautier C; Gaspin C; Sagot MF
BMC Bioinformatics; 2015 May; 16():179. PubMed ID: 26022464
[TBL] [Abstract][Full Text] [Related]
14. Genome-wide search for miRNA-target interactions in Arabidopsis thaliana with an integrated approach.
Ding J; Li D; Ohler U; Guan J; Zhou S
BMC Genomics; 2012 Jun; 13 Suppl 3(Suppl 3):S3. PubMed ID: 22759612
[TBL] [Abstract][Full Text] [Related]
15. Computational evidence for hundreds of non-conserved plant microRNAs.
Lindow M; Krogh A
BMC Genomics; 2005 Sep; 6():119. PubMed ID: 16159385
[TBL] [Abstract][Full Text] [Related]
16. MicroRNA target prediction using thermodynamic and sequence curves.
Ghoshal A; Shankar R; Bagchi S; Grama A; Chaterji S
BMC Genomics; 2015 Nov; 16():999. PubMed ID: 26608597
[TBL] [Abstract][Full Text] [Related]
17. miRA: adaptable novel miRNA identification in plants using small RNA sequencing data.
Evers M; Huttner M; Dueck A; Meister G; Engelmann JC
BMC Bioinformatics; 2015 Nov; 16():370. PubMed ID: 26542525
[TBL] [Abstract][Full Text] [Related]
18. Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome.
Addo-Quaye C; Eshoo TW; Bartel DP; Axtell MJ
Curr Biol; 2008 May; 18(10):758-762. PubMed ID: 18472421
[TBL] [Abstract][Full Text] [Related]
19. Prediction of Plant miRNA Targets.
Pandey P; Srivastava PK; Pandey SP
Methods Mol Biol; 2019; 1932():99-107. PubMed ID: 30701494
[TBL] [Abstract][Full Text] [Related]
20. Integrating full spectrum of sequence features into predicting functional microRNA-mRNA interactions.
Wang Z; Xu W; Liu Y
Bioinformatics; 2015 Nov; 31(21):3529-36. PubMed ID: 26130578
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]