These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

208 related articles for article (PubMed ID: 24885610)

  • 1. πBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios.
    Bielejec F; Lemey P; Carvalho LM; Baele G; Rambaut A; Suchard MA
    BMC Bioinformatics; 2014 May; 15():133. PubMed ID: 24885610
    [TBL] [Abstract][Full Text] [Related]  

  • 2. BEAST: Bayesian evolutionary analysis by sampling trees.
    Drummond AJ; Rambaut A
    BMC Evol Biol; 2007 Nov; 7():214. PubMed ID: 17996036
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Markov-Modulated Continuous-Time Markov Chains to Identify Site- and Branch-Specific Evolutionary Variation in BEAST.
    Baele G; Gill MS; Bastide P; Lemey P; Suchard MA
    Syst Biol; 2021 Jan; 70(1):181-189. PubMed ID: 32415977
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Bayesian phylogenetics with BEAUti and the BEAST 1.7.
    Drummond AJ; Suchard MA; Xie D; Rambaut A
    Mol Biol Evol; 2012 Aug; 29(8):1969-73. PubMed ID: 22367748
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment.
    Sipos B; Massingham T; Jordan GE; Goldman N
    BMC Bioinformatics; 2011 Apr; 12():104. PubMed ID: 21504561
    [TBL] [Abstract][Full Text] [Related]  

  • 7. BEAST 2: a software platform for Bayesian evolutionary analysis.
    Bouckaert R; Heled J; Kühnert D; Vaughan T; Wu CH; Xie D; Suchard MA; Rambaut A; Drummond AJ
    PLoS Comput Biol; 2014 Apr; 10(4):e1003537. PubMed ID: 24722319
    [TBL] [Abstract][Full Text] [Related]  

  • 8. StatAlign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees.
    Novák A; Miklós I; Lyngsø R; Hein J
    Bioinformatics; 2008 Oct; 24(20):2403-4. PubMed ID: 18753153
    [TBL] [Abstract][Full Text] [Related]  

  • 9. BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis.
    Bouckaert R; Vaughan TG; Barido-Sottani J; Duchêne S; Fourment M; Gavryushkina A; Heled J; Jones G; Kühnert D; De Maio N; Matschiner M; Mendes FK; Müller NF; Ogilvie HA; du Plessis L; Popinga A; Rambaut A; Rasmussen D; Siveroni I; Suchard MA; Wu CH; Xie D; Zhang C; Stadler T; Drummond AJ
    PLoS Comput Biol; 2019 Apr; 15(4):e1006650. PubMed ID: 30958812
    [TBL] [Abstract][Full Text] [Related]  

  • 10. High-Performance Computing in Bayesian Phylogenetics and Phylodynamics Using BEAGLE.
    Baele G; Ayres DL; Rambaut A; Suchard MA; Lemey P
    Methods Mol Biol; 2019; 1910():691-722. PubMed ID: 31278682
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Bayesian selection of nucleotide substitution models and their site assignments.
    Wu CH; Suchard MA; Drummond AJ
    Mol Biol Evol; 2013 Mar; 30(3):669-88. PubMed ID: 23233462
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10.
    Suchard MA; Lemey P; Baele G; Ayres DL; Drummond AJ; Rambaut A
    Virus Evol; 2018 Jan; 4(1):vey016. PubMed ID: 29942656
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v1.0).
    Cornuet JM; Ravigné V; Estoup A
    BMC Bioinformatics; 2010 Jul; 11():401. PubMed ID: 20667077
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Estimation of evolutionary parameters using short, random and partial sequences from mixed samples of anonymous individuals.
    Wu SH; Rodrigo AG
    BMC Bioinformatics; 2015 Nov; 16():357. PubMed ID: 26536860
    [TBL] [Abstract][Full Text] [Related]  

  • 15. An Efficient Coalescent Epoch Model for Bayesian Phylogenetic Inference.
    Bouckaert RR
    Syst Biol; 2022 Oct; 71(6):1549-1560. PubMed ID: 35212733
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Bayesian random local clocks, or one rate to rule them all.
    Drummond AJ; Suchard MA
    BMC Biol; 2010 Aug; 8():114. PubMed ID: 20807414
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7.
    Rambaut A; Drummond AJ; Xie D; Baele G; Suchard MA
    Syst Biol; 2018 Sep; 67(5):901-904. PubMed ID: 29718447
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.
    Tamura K; Peterson D; Peterson N; Stecher G; Nei M; Kumar S
    Mol Biol Evol; 2011 Oct; 28(10):2731-9. PubMed ID: 21546353
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Bayesian inference of phylogeny and its impact on evolutionary biology.
    Huelsenbeck JP; Ronquist F; Nielsen R; Bollback JP
    Science; 2001 Dec; 294(5550):2310-4. PubMed ID: 11743192
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEAST.
    Baele G; Lemey P; Rambaut A; Suchard MA
    Bioinformatics; 2017 Jun; 33(12):1798-1805. PubMed ID: 28200071
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.