These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

605 related articles for article (PubMed ID: 24899342)

  • 1. A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples.
    Naccache SN; Federman S; Veeraraghavan N; Zaharia M; Lee D; Samayoa E; Bouquet J; Greninger AL; Luk KC; Enge B; Wadford DA; Messenger SL; Genrich GL; Pellegrino K; Grard G; Leroy E; Schneider BS; Fair JN; Martínez MA; Isa P; Crump JA; DeRisi JL; Sittler T; Hackett J; Miller S; Chiu CY
    Genome Res; 2014 Jul; 24(7):1180-92. PubMed ID: 24899342
    [TBL] [Abstract][Full Text] [Related]  

  • 2. 16SPIP: a comprehensive analysis pipeline for rapid pathogen detection in clinical samples based on 16S metagenomic sequencing.
    Miao J; Han N; Qiang Y; Zhang T; Li X; Zhang W
    BMC Bioinformatics; 2017 Dec; 18(Suppl 16):568. PubMed ID: 29297318
    [TBL] [Abstract][Full Text] [Related]  

  • 3. VIP: an integrated pipeline for metagenomics of virus identification and discovery.
    Li Y; Wang H; Nie K; Zhang C; Zhang Y; Wang J; Niu P; Ma X
    Sci Rep; 2016 Mar; 6():23774. PubMed ID: 27026381
    [TBL] [Abstract][Full Text] [Related]  

  • 4. PAIPline: pathogen identification in metagenomic and clinical next generation sequencing samples.
    Andrusch A; Dabrowski PW; Klenner J; Tausch SH; Kohl C; Osman AA; Renard BY; Nitsche A
    Bioinformatics; 2018 Sep; 34(17):i715-i721. PubMed ID: 30423069
    [TBL] [Abstract][Full Text] [Related]  

  • 5. drVM: a new tool for efficient genome assembly of known eukaryotic viruses from metagenomes.
    Lin HH; Liao YC
    Gigascience; 2017 Feb; 6(2):1-10. PubMed ID: 28369462
    [TBL] [Abstract][Full Text] [Related]  

  • 6.
    MacDonald ML; Polson SW; Lee KH
    mSphere; 2021 Apr; 6(2):. PubMed ID: 33883263
    [TBL] [Abstract][Full Text] [Related]  

  • 7. InteMAP: Integrated metagenomic assembly pipeline for NGS short reads.
    Lai B; Wang F; Wang X; Duan L; Zhu H
    BMC Bioinformatics; 2015 Aug; 16():244. PubMed ID: 26250558
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Rapid screening and identification of viral pathogens in metagenomic data.
    Song S; Ma L; Xu X; Shi H; Li X; Liu Y; Hao P
    BMC Med Genomics; 2021 Dec; 14(Suppl 6):289. PubMed ID: 34903237
    [TBL] [Abstract][Full Text] [Related]  

  • 9. taxMaps: comprehensive and highly accurate taxonomic classification of short-read data in reasonable time.
    Corvelo A; Clarke WE; Robine N; Zody MC
    Genome Res; 2018 May; 28(5):751-758. PubMed ID: 29588360
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Next Generation Sequencing and Bioinformatics Methodologies for Infectious Disease Research and Public Health: Approaches, Applications, and Considerations for Development of Laboratory Capacity.
    Maljkovic Berry I; Melendrez MC; Bishop-Lilly KA; Rutvisuttinunt W; Pollett S; Talundzic E; Morton L; Jarman RG
    J Infect Dis; 2020 Mar; 221(Suppl 3):S292-S307. PubMed ID: 31612214
    [TBL] [Abstract][Full Text] [Related]  

  • 11. INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance.
    Santos JD; Sobral D; Pinheiro M; Isidro J; Bogaardt C; Pinto M; Eusébio R; Santos A; Mamede R; Horton DL; Gomes JP; ; Borges V
    Genome Med; 2024 Apr; 16(1):61. PubMed ID: 38659008
    [TBL] [Abstract][Full Text] [Related]  

  • 12. ViraPipe: scalable parallel pipeline for viral metagenome analysis from next generation sequencing reads.
    Maarala AI; Bzhalava Z; Dillner J; Heljanko K; Bzhalava D
    Bioinformatics; 2018 Mar; 34(6):928-935. PubMed ID: 29106455
    [TBL] [Abstract][Full Text] [Related]  

  • 13. GPMeta: a GPU-accelerated method for ultrarapid pathogen identification from metagenomic sequences.
    Wang X; Wang T; Xie Z; Zhang Y; Xia S; Sun R; He X; Xiang R; Zheng Q; Liu Z; Wang J; Wu H; Jin X; Chen W; Li D; He Z
    Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36917170
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Evaluation of a hybrid approach using UBLAST and BLASTX for metagenomic sequences annotation of specific functional genes.
    Yang Y; Jiang XT; Zhang T
    PLoS One; 2014; 9(10):e110947. PubMed ID: 25347677
    [TBL] [Abstract][Full Text] [Related]  

  • 15. VPipe: an Automated Bioinformatics Platform for Assembly and Management of Viral Next-Generation Sequencing Data.
    Wagner DD; Marine RL; Ramos E; Ng TFF; Castro CJ; Okomo-Adhiambo M; Harvey K; Doho G; Kelly R; Jain Y; Tatusov RL; Silva H; Rota PA; Khan AN; Oberste MS
    Microbiol Spectr; 2022 Apr; 10(2):e0256421. PubMed ID: 35234489
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Clinical Metagenomic Next-Generation Sequencing for Pathogen Detection.
    Gu W; Miller S; Chiu CY
    Annu Rev Pathol; 2019 Jan; 14():319-338. PubMed ID: 30355154
    [TBL] [Abstract][Full Text] [Related]  

  • 17. HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): a specific and comprehensive pipeline for metagenomic shotgun sequencing data analysis.
    Ferravante C; Memoli D; Palumbo D; Ciaramella P; Di Loria A; D'Agostino Y; Nassa G; Rizzo F; Tarallo R; Weisz A; Giurato G
    BMC Bioinformatics; 2021 Jul; 22(Suppl 7):106. PubMed ID: 34225648
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A bioinformatics pipeline integrating predictive metagenomics profiling for the analysis of 16S rDNA/rRNA sequencing data originated from foods.
    Mataragas M; Alessandria V; Ferrocino I; Rantsiou K; Cocolin L
    Food Microbiol; 2018 Dec; 76():279-286. PubMed ID: 30166151
    [TBL] [Abstract][Full Text] [Related]  

  • 19. De novo assembly of highly polymorphic metagenomic data using in situ generated reference sequences and a novel BLAST-based assembly pipeline.
    Lin YY; Hsieh CH; Chen JH; Lu X; Kao JH; Chen PJ; Chen DS; Wang HY
    BMC Bioinformatics; 2017 Apr; 18(1):223. PubMed ID: 28446139
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MePIC, metagenomic pathogen identification for clinical specimens.
    Takeuchi F; Sekizuka T; Yamashita A; Ogasawara Y; Mizuta K; Kuroda M
    Jpn J Infect Dis; 2014; 67(1):62-5. PubMed ID: 24451106
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 31.