These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

215 related articles for article (PubMed ID: 24906633)

  • 1. Scoring docking conformations using predicted protein interfaces.
    Esmaielbeiki R; Nebel JC
    BMC Bioinformatics; 2014 Jun; 15():171. PubMed ID: 24906633
    [TBL] [Abstract][Full Text] [Related]  

  • 2. DockRank: ranking docked conformations using partner-specific sequence homology-based protein interface prediction.
    Xue LC; Jordan RA; El-Manzalawy Y; Dobbs D; Honavar V
    Proteins; 2014 Feb; 82(2):250-67. PubMed ID: 23873600
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Energy-based graph convolutional networks for scoring protein docking models.
    Cao Y; Shen Y
    Proteins; 2020 Aug; 88(8):1091-1099. PubMed ID: 32144844
    [TBL] [Abstract][Full Text] [Related]  

  • 4. iScore: a novel graph kernel-based function for scoring protein-protein docking models.
    Geng C; Jung Y; Renaud N; Honavar V; Bonvin AMJJ; Xue LC
    Bioinformatics; 2020 Jan; 36(1):112-121. PubMed ID: 31199455
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Protein-protein docking with multiple residue conformations and residue substitutions.
    Lorber DM; Udo MK; Shoichet BK
    Protein Sci; 2002 Jun; 11(6):1393-408. PubMed ID: 12021438
    [TBL] [Abstract][Full Text] [Related]  

  • 6. CLUB-MARTINI: Selecting Favourable Interactions amongst Available Candidates, a Coarse-Grained Simulation Approach to Scoring Docking Decoys.
    Hou Q; Lensink MF; Heringa J; Feenstra KA
    PLoS One; 2016; 11(5):e0155251. PubMed ID: 27166787
    [TBL] [Abstract][Full Text] [Related]  

  • 7. MetaScore: A Novel Machine-Learning-Based Approach to Improve Traditional Scoring Functions for Scoring Protein-Protein Docking Conformations.
    Jung Y; Geng C; Bonvin AMJJ; Xue LC; Honavar VG
    Biomolecules; 2023 Jan; 13(1):. PubMed ID: 36671507
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Protein docking prediction using predicted protein-protein interface.
    Li B; Kihara D
    BMC Bioinformatics; 2012 Jan; 13():7. PubMed ID: 22233443
    [TBL] [Abstract][Full Text] [Related]  

  • 9. How to choose templates for modeling of protein complexes: Insights from benchmarking template-based docking.
    Chakravarty D; McElfresh GW; Kundrotas PJ; Vakser IA
    Proteins; 2020 Aug; 88(8):1070-1081. PubMed ID: 31994759
    [TBL] [Abstract][Full Text] [Related]  

  • 10. DECK: Distance and environment-dependent, coarse-grained, knowledge-based potentials for protein-protein docking.
    Liu S; Vakser IA
    BMC Bioinformatics; 2011 Jul; 12():280. PubMed ID: 21745398
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Ranking Docked Models of Protein-Protein Complexes Using Predicted Partner-Specific Protein-Protein Interfaces: A Preliminary Study.
    Xue LC; Jordan RA; El-Manzalawy Y; Dobbs D; Honavar V
    ACM BCB; 2011 Aug; 2011():441-445. PubMed ID: 25905110
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Structural interface parameters are discriminatory in recognising near-native poses of protein-protein interactions.
    Malhotra S; Sankar K; Sowdhamini R
    PLoS One; 2014; 9(2):e80255. PubMed ID: 24498255
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Scoring a diverse set of high-quality docked conformations: a metascore based on electrostatic and desolvation interactions.
    Camacho CJ; Ma H; Champ PC
    Proteins; 2006 Jun; 63(4):868-77. PubMed ID: 16506242
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Assessment of blind predictions of protein-protein interactions: current status of docking methods.
    Méndez R; Leplae R; De Maria L; Wodak SJ
    Proteins; 2003 Jul; 52(1):51-67. PubMed ID: 12784368
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Structural prediction of protein-RNA interaction by computational docking with propensity-based statistical potentials.
    Pérez-Cano L; Solernou A; Pons C; Fernández-Recio J
    Pac Symp Biocomput; 2010; ():293-301. PubMed ID: 19908381
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Scoring optimisation of unbound protein-protein docking including protein binding site predictions.
    Schneider S; Zacharias M
    J Mol Recognit; 2012 Jan; 25(1):15-23. PubMed ID: 22213447
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Docking and scoring protein interactions: CAPRI 2009.
    Lensink MF; Wodak SJ
    Proteins; 2010 Nov; 78(15):3073-84. PubMed ID: 20806235
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ClusPro: an automated docking and discrimination method for the prediction of protein complexes.
    Comeau SR; Gatchell DW; Vajda S; Camacho CJ
    Bioinformatics; 2004 Jan; 20(1):45-50. PubMed ID: 14693807
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Blind predictions of protein interfaces by docking calculations in CAPRI.
    Lensink MF; Wodak SJ
    Proteins; 2010 Nov; 78(15):3085-95. PubMed ID: 20839234
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Protein-protein docking using region-based 3D Zernike descriptors.
    Venkatraman V; Yang YD; Sael L; Kihara D
    BMC Bioinformatics; 2009 Dec; 10():407. PubMed ID: 20003235
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.