395 related articles for article (PubMed ID: 24909410)
1. MS Amanda, a universal identification algorithm optimized for high accuracy tandem mass spectra.
Dorfer V; Pichler P; Stranzl T; Stadlmann J; Taus T; Winkler S; Mechtler K
J Proteome Res; 2014 Aug; 13(8):3679-84. PubMed ID: 24909410
[TBL] [Abstract][Full Text] [Related]
2. Optimization of Search Engines and Postprocessing Approaches to Maximize Peptide and Protein Identification for High-Resolution Mass Data.
Tu C; Sheng Q; Li J; Ma D; Shen X; Wang X; Shyr Y; Yi Z; Qu J
J Proteome Res; 2015 Nov; 14(11):4662-73. PubMed ID: 26390080
[TBL] [Abstract][Full Text] [Related]
3. High-throughput database search and large-scale negative polarity liquid chromatography-tandem mass spectrometry with ultraviolet photodissociation for complex proteomic samples.
Madsen JA; Xu H; Robinson MR; Horton AP; Shaw JB; Giles DK; Kaoud TS; Dalby KN; Trent MS; Brodbelt JS
Mol Cell Proteomics; 2013 Sep; 12(9):2604-14. PubMed ID: 23695934
[TBL] [Abstract][Full Text] [Related]
4. Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic-peptidomic analysis: comparison of peptide identification methods.
Shen Y; Tolić N; Xie F; Zhao R; Purvine SO; Schepmoes AA; Moore RJ; Anderson GA; Smith RD
J Proteome Res; 2011 Sep; 10(9):3929-43. PubMed ID: 21678914
[TBL] [Abstract][Full Text] [Related]
5. Enhanced peptide identification by electron transfer dissociation using an improved Mascot Percolator.
Wright JC; Collins MO; Yu L; Käll L; Brosch M; Choudhary JS
Mol Cell Proteomics; 2012 Aug; 11(8):478-91. PubMed ID: 22493177
[TBL] [Abstract][Full Text] [Related]
6. The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search.
Kim S; Mischerikow N; Bandeira N; Navarro JD; Wich L; Mohammed S; Heck AJ; Pevzner PA
Mol Cell Proteomics; 2010 Dec; 9(12):2840-52. PubMed ID: 20829449
[TBL] [Abstract][Full Text] [Related]
7. Improving collision induced dissociation (CID), high energy collision dissociation (HCD), and electron transfer dissociation (ETD) fourier transform MS/MS degradome-peptidome identifications using high accuracy mass information.
Shen Y; Tolić N; Purvine SO; Smith RD
J Proteome Res; 2012 Feb; 11(2):668-77. PubMed ID: 22054047
[TBL] [Abstract][Full Text] [Related]
8. A novel algorithm for validating peptide identification from a shotgun proteomics search engine.
Jian L; Niu X; Xia Z; Samir P; Sumanasekera C; Mu Z; Jennings JL; Hoek KL; Allos T; Howard LM; Edwards KM; Weil PA; Link AJ
J Proteome Res; 2013 Mar; 12(3):1108-19. PubMed ID: 23402659
[TBL] [Abstract][Full Text] [Related]
9. MS Amanda 2.0: Advancements in the standalone implementation.
Dorfer V; Strobl M; Winkler S; Mechtler K
Rapid Commun Mass Spectrom; 2021 Jun; 35(11):e9088. PubMed ID: 33759252
[TBL] [Abstract][Full Text] [Related]
10. In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.
Audain E; Uszkoreit J; Sachsenberg T; Pfeuffer J; Liang X; Hermjakob H; Sanchez A; Eisenacher M; Reinert K; Tabb DL; Kohlbacher O; Perez-Riverol Y
J Proteomics; 2017 Jan; 150():170-182. PubMed ID: 27498275
[TBL] [Abstract][Full Text] [Related]
11. pClean: An Algorithm To Preprocess High-Resolution Tandem Mass Spectra for Database Searching.
Deng Y; Ren Z; Pan Q; Qi D; Wen B; Ren Y; Yang H; Wu L; Chen F; Liu S
J Proteome Res; 2019 Sep; 18(9):3235-3244. PubMed ID: 31364357
[TBL] [Abstract][Full Text] [Related]
12. Crescendo: A Protein Sequence Database Search Engine for Tandem Mass Spectra.
Wang J; Zhang Y; Yu Y
J Am Soc Mass Spectrom; 2015 Jul; 26(7):1077-84. PubMed ID: 25895889
[TBL] [Abstract][Full Text] [Related]
13. A Tandem Mass Spectrometry Sequence Database Search Method for Identification of O-Fucosylated Proteins by Mass Spectrometry.
Swearingen KE; Eng JK; Shteynberg D; Vigdorovich V; Springer TA; Mendoza L; Sather DN; Deutsch EW; Kappe SHI; Moritz RL
J Proteome Res; 2019 Feb; 18(2):652-663. PubMed ID: 30523691
[TBL] [Abstract][Full Text] [Related]
14. Identification of related peptides through the analysis of fragment ion mass shifts.
Wilhelm T; Jones AM
J Proteome Res; 2014 Sep; 13(9):4002-11. PubMed ID: 25058668
[TBL] [Abstract][Full Text] [Related]
15. A new probabilistic database search algorithm for ETD spectra.
Sadygov RG; Good DM; Swaney DL; Coon JJ
J Proteome Res; 2009 Jun; 8(6):3198-205. PubMed ID: 19354237
[TBL] [Abstract][Full Text] [Related]
16. Interpretation of Tandem Mass Spectra of Posttranslationally Modified Peptides.
Bunkenborg J; Matthiesen R
Methods Mol Biol; 2020; 2051():199-230. PubMed ID: 31552630
[TBL] [Abstract][Full Text] [Related]
17. Binomial probability distribution model-based protein identification algorithm for tandem mass spectrometry utilizing peak intensity information.
Xiao CL; Chen XZ; Du YL; Sun X; Zhang G; He QY
J Proteome Res; 2013 Jan; 12(1):328-35. PubMed ID: 23163785
[TBL] [Abstract][Full Text] [Related]
18. Param-Medic: A Tool for Improving MS/MS Database Search Yield by Optimizing Parameter Settings.
May DH; Tamura K; Noble WS
J Proteome Res; 2017 Apr; 16(4):1817-1824. PubMed ID: 28263070
[TBL] [Abstract][Full Text] [Related]
19. pNovo+: de novo peptide sequencing using complementary HCD and ETD tandem mass spectra.
Chi H; Chen H; He K; Wu L; Yang B; Sun RX; Liu J; Zeng WF; Song CQ; He SM; Dong MQ
J Proteome Res; 2013 Feb; 12(2):615-25. PubMed ID: 23272783
[TBL] [Abstract][Full Text] [Related]
20. CharmeRT: Boosting Peptide Identifications by Chimeric Spectra Identification and Retention Time Prediction.
Dorfer V; Maltsev S; Winkler S; Mechtler K
J Proteome Res; 2018 Aug; 17(8):2581-2589. PubMed ID: 29863353
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]