386 related articles for article (PubMed ID: 24909410)
21. Automated phosphopeptide identification using multiple MS/MS fragmentation modes.
Vandenbogaert M; Hourdel V; Jardin-Mathé O; Bigeard J; Bonhomme L; Legros V; Hirt H; Schwikowski B; Pflieger D
J Proteome Res; 2012 Dec; 11(12):5695-703. PubMed ID: 23094866
[TBL] [Abstract][Full Text] [Related]
22. Proteome analysis of Sorangium cellulosum employing 2D-HPLC-MS/MS and improved database searching strategies for CID and ETD fragment spectra.
Leinenbach A; Hartmer R; Lubeck M; Kneissl B; Elnakady YA; Baessmann C; Müller R; Huber CG
J Proteome Res; 2009 Sep; 8(9):4350-61. PubMed ID: 19634914
[TBL] [Abstract][Full Text] [Related]
23. Multiplexed Post-Experimental Monoisotopic Mass Refinement (mPE-MMR) to Increase Sensitivity and Accuracy in Peptide Identifications from Tandem Mass Spectra of Cofragmentation.
Madar IH; Ko SI; Kim H; Mun DG; Kim S; Smith RD; Lee SW
Anal Chem; 2017 Jan; 89(2):1244-1253. PubMed ID: 27966901
[TBL] [Abstract][Full Text] [Related]
24. Enhanced peptide quantification using spectral count clustering and cluster abundance.
Lee S; Kwon MS; Lee HJ; Paik YK; Tang H; Lee JK; Park T
BMC Bioinformatics; 2011 Oct; 12():423. PubMed ID: 22034872
[TBL] [Abstract][Full Text] [Related]
25. Comparative database search engine analysis on massive tandem mass spectra of pork-based food products for halal proteomics.
Amir SH; Yuswan MH; Aizat WM; Mansor MK; Desa MNM; Yusof YA; Song LK; Mustafa S
J Proteomics; 2021 Jun; 241():104240. PubMed ID: 33894373
[TBL] [Abstract][Full Text] [Related]
26. Micro-Data-Independent Acquisition for High-Throughput Proteomics and Sensitive Peptide Mass Spectrum Identification.
Heaven MR; Cobbs AL; Nei YW; Gutierrez DB; Herren AW; Gunawardena HP; Caprioli RM; Norris JL
Anal Chem; 2018 Aug; 90(15):8905-8911. PubMed ID: 29984981
[TBL] [Abstract][Full Text] [Related]
27. Maximizing the sensitivity and reliability of peptide identification in large-scale proteomic experiments by harnessing multiple search engines.
Yu W; Taylor JA; Davis MT; Bonilla LE; Lee KA; Auger PL; Farnsworth CC; Welcher AA; Patterson SD
Proteomics; 2010 Mar; 10(6):1172-89. PubMed ID: 20101609
[TBL] [Abstract][Full Text] [Related]
28. Deconvolution of mixture spectra and increased throughput of peptide identification by utilization of intensified complementary ions formed in tandem mass spectrometry.
Kryuchkov F; Verano-Braga T; Hansen TA; Sprenger RR; Kjeldsen F
J Proteome Res; 2013 Jul; 12(7):3362-71. PubMed ID: 23725413
[TBL] [Abstract][Full Text] [Related]
29. MAZIE: a mass and charge inference engine to enhance database searching of tandem mass spectra.
Victor KG; Murgai M; Lyons CE; Templeton TA; Moshnikov SA; Templeton DJ
J Am Soc Mass Spectrom; 2010 Jan; 21(1):80-7. PubMed ID: 19850495
[TBL] [Abstract][Full Text] [Related]
30. A proteomics search algorithm specifically designed for high-resolution tandem mass spectra.
Wenger CD; Coon JJ
J Proteome Res; 2013 Mar; 12(3):1377-86. PubMed ID: 23323968
[TBL] [Abstract][Full Text] [Related]
31. Andromeda: a peptide search engine integrated into the MaxQuant environment.
Cox J; Neuhauser N; Michalski A; Scheltema RA; Olsen JV; Mann M
J Proteome Res; 2011 Apr; 10(4):1794-805. PubMed ID: 21254760
[TBL] [Abstract][Full Text] [Related]
32. Bolt: a New Age Peptide Search Engine for Comprehensive MS/MS Sequencing Through Vast Protein Databases in Minutes.
Prakash A; Ahmad S; Majumder S; Jenkins C; Orsburn B
J Am Soc Mass Spectrom; 2019 Nov; 30(11):2408-2418. PubMed ID: 31452088
[TBL] [Abstract][Full Text] [Related]
33. FPTMS: Frequency-based approach to identify the peptide from the low-energy collision-induced dissociation tandem mass spectra.
Ramachandran S; Thomas T
J Proteomics; 2021 Mar; 235():104116. PubMed ID: 33453436
[TBL] [Abstract][Full Text] [Related]
34. De novo peptide sequencing using CID and HCD spectra pairs.
Yan Y; Kusalik AJ; Wu FX
Proteomics; 2016 Oct; 16(20):2615-2624. PubMed ID: 27402425
[TBL] [Abstract][Full Text] [Related]
35. msCRUSH: Fast Tandem Mass Spectral Clustering Using Locality Sensitive Hashing.
Wang L; Li S; Tang H
J Proteome Res; 2019 Jan; 18(1):147-158. PubMed ID: 30511858
[TBL] [Abstract][Full Text] [Related]
36. Evaluation of several MS/MS search algorithms for analysis of spectra derived from electron transfer dissociation experiments.
Kandasamy K; Pandey A; Molina H
Anal Chem; 2009 Sep; 81(17):7170-80. PubMed ID: 19639959
[TBL] [Abstract][Full Text] [Related]
37. A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry.
Pan C; Park BH; McDonald WH; Carey PA; Banfield JF; VerBerkmoes NC; Hettich RL; Samatova NF
BMC Bioinformatics; 2010 Mar; 11():118. PubMed ID: 20205730
[TBL] [Abstract][Full Text] [Related]
38. Data-Dependent Scoring Parameter Optimization in MS-GF+ Using Spectrum Quality Filter.
Jo H; Paek E
J Proteome Res; 2018 Oct; 17(10):3593-3598. PubMed ID: 30033731
[TBL] [Abstract][Full Text] [Related]
39. Expert system for computer-assisted annotation of MS/MS spectra.
Neuhauser N; Michalski A; Cox J; Mann M
Mol Cell Proteomics; 2012 Nov; 11(11):1500-9. PubMed ID: 22888147
[TBL] [Abstract][Full Text] [Related]
40. Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra.
Chen Y; Kwon SW; Kim SC; Zhao Y
J Proteome Res; 2005; 4(3):998-1005. PubMed ID: 15952748
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]