382 related articles for article (PubMed ID: 24909410)
41. Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos.
Frese CK; Altelaar AF; Hennrich ML; Nolting D; Zeller M; Griep-Raming J; Heck AJ; Mohammed S
J Proteome Res; 2011 May; 10(5):2377-88. PubMed ID: 21413819
[TBL] [Abstract][Full Text] [Related]
42. DtaRefinery, a software tool for elimination of systematic errors from parent ion mass measurements in tandem mass spectra data sets.
Petyuk VA; Mayampurath AM; Monroe ME; Polpitiya AD; Purvine SO; Anderson GA; Camp DG; Smith RD
Mol Cell Proteomics; 2010 Mar; 9(3):486-96. PubMed ID: 20019053
[TBL] [Abstract][Full Text] [Related]
43. Improving sensitivity by probabilistically combining results from multiple MS/MS search methodologies.
Searle BC; Turner M; Nesvizhskii AI
J Proteome Res; 2008 Jan; 7(1):245-53. PubMed ID: 18173222
[TBL] [Abstract][Full Text] [Related]
44. iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates.
Shteynberg D; Deutsch EW; Lam H; Eng JK; Sun Z; Tasman N; Mendoza L; Moritz RL; Aebersold R; Nesvizhskii AI
Mol Cell Proteomics; 2011 Dec; 10(12):M111.007690. PubMed ID: 21876204
[TBL] [Abstract][Full Text] [Related]
45. An algorithm for identifying multiply modified endogenous proteins using both full-scan and high-resolution tandem mass spectrometric data.
Mazur MT; Fyhr R
Rapid Commun Mass Spectrom; 2011 Dec; 25(23):3617-26. PubMed ID: 22095511
[TBL] [Abstract][Full Text] [Related]
46. Effective Leveraging of Targeted Search Spaces for Improving Peptide Identification in Tandem Mass Spectrometry Based Proteomics.
Shanmugam AK; Nesvizhskii AI
J Proteome Res; 2015 Dec; 14(12):5169-78. PubMed ID: 26569054
[TBL] [Abstract][Full Text] [Related]
47. Combining High-Resolution and Exact Calibration To Boost Statistical Power: A Well-Calibrated Score Function for High-Resolution MS2 Data.
Lin A; Howbert JJ; Noble WS
J Proteome Res; 2018 Nov; 17(11):3644-3656. PubMed ID: 30221945
[TBL] [Abstract][Full Text] [Related]
48. DeltAMT: a statistical algorithm for fast detection of protein modifications from LC-MS/MS data.
Fu Y; Xiu LY; Jia W; Ye D; Sun RX; Qian XH; He SM
Mol Cell Proteomics; 2011 May; 10(5):M110.000455. PubMed ID: 21321130
[TBL] [Abstract][Full Text] [Related]
49. Improving the Protein Inference from Bottom-Up Proteomic Data Using Identifications from MS1 Spectra.
Ivanov MV; Solovyeva EM; Bubis JA; Gorshkov MV
J Am Soc Mass Spectrom; 2021 May; 32(5):1258-1262. PubMed ID: 33900766
[TBL] [Abstract][Full Text] [Related]
50. Analytical utility of mass spectral binning in proteomic experiments by SPectral Immonium Ion Detection (SPIID).
Kelstrup CD; Frese C; Heck AJ; Olsen JV; Nielsen ML
Mol Cell Proteomics; 2014 Aug; 13(8):1914-24. PubMed ID: 24895383
[TBL] [Abstract][Full Text] [Related]
51. Mascot-derived false positive peptide identifications revealed by manual analysis of tandem mass spectra.
Chen Y; Zhang J; Xing G; Zhao Y
J Proteome Res; 2009 Jun; 8(6):3141-7. PubMed ID: 19368407
[TBL] [Abstract][Full Text] [Related]
52. Evaluating de novo sequencing in proteomics: already an accurate alternative to database-driven peptide identification?
Muth T; Renard BY
Brief Bioinform; 2018 Sep; 19(5):954-970. PubMed ID: 28369237
[TBL] [Abstract][Full Text] [Related]
53. PepArML: A Meta-Search Peptide Identification Platform for Tandem Mass Spectra.
Edwards NJ
Curr Protoc Bioinformatics; 2013 Dec; 44(1323):13.23.1-23. PubMed ID: 25663956
[TBL] [Abstract][Full Text] [Related]
54. Tailoring to Search Engines: Bottom-Up Proteomics with Collision Energies Optimized for Identification Confidence.
Révész Á; Milley MG; Nagy K; Szabó D; Kalló G; Csősz É; Vékey K; Drahos L
J Proteome Res; 2021 Jan; 20(1):474-484. PubMed ID: 33284634
[TBL] [Abstract][Full Text] [Related]
55. DirecTag: accurate sequence tags from peptide MS/MS through statistical scoring.
Tabb DL; Ma ZQ; Martin DB; Ham AJ; Chambers MC
J Proteome Res; 2008 Sep; 7(9):3838-46. PubMed ID: 18630943
[TBL] [Abstract][Full Text] [Related]
56. HiXCorr: a portable high-speed XCorr engine for high-resolution tandem mass spectrometry.
Kim H; Jo H; Park H; Paek E
Bioinformatics; 2015 Dec; 31(24):4026-8. PubMed ID: 26315908
[TBL] [Abstract][Full Text] [Related]
57. HI-bone: a scoring system for identifying phenylisothiocyanate-derivatized peptides based on precursor mass and high intensity fragment ions.
Perez-Riverol Y; Sánchez A; Noda J; Borges D; Carvalho PC; Wang R; Vizcaíno JA; Betancourt L; Ramos Y; Duarte G; Nogueira FC; González LJ; Padrón G; Tabb DL; Hermjakob H; Domont GB; Besada V
Anal Chem; 2013 Apr; 85(7):3515-20. PubMed ID: 23448308
[TBL] [Abstract][Full Text] [Related]
58. H-score, a mass accuracy driven rescoring approach for improved peptide identification in modification rich samples.
Savitski MM; Mathieson T; Becher I; Bantscheff M
J Proteome Res; 2010 Nov; 9(11):5511-6. PubMed ID: 20836569
[TBL] [Abstract][Full Text] [Related]
59. Using SEQUEST with theoretically complete sequence databases.
Sadygov RG
J Am Soc Mass Spectrom; 2015 Nov; 26(11):1858-64. PubMed ID: 26238326
[TBL] [Abstract][Full Text] [Related]
60. DISMS2: A flexible algorithm for direct proteome- wide distance calculation of LC-MS/MS runs.
Rieder V; Blank-Landeshammer B; Stuhr M; Schell T; Biß K; Kollipara L; Meyer A; Pfenninger M; Westphal H; Sickmann A; Rahnenführer J
BMC Bioinformatics; 2017 Mar; 18(1):148. PubMed ID: 28253837
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]