224 related articles for article (PubMed ID: 24922281)
1. An HMM-based comparative genomic framework for detecting introgression in eukaryotes.
Liu KJ; Dai J; Truong K; Song Y; Kohn MH; Nakhleh L
PLoS Comput Biol; 2014 Jun; 10(6):e1003649. PubMed ID: 24922281
[TBL] [Abstract][Full Text] [Related]
2. Reticulate evolutionary history and extensive introgression in mosquito species revealed by phylogenetic network analysis.
Wen D; Yu Y; Hahn MW; Nakhleh L
Mol Ecol; 2016 Jun; 25(11):2361-72. PubMed ID: 26808290
[TBL] [Abstract][Full Text] [Related]
3. Interspecific introgressive origin of genomic diversity in the house mouse.
Liu KJ; Steinberg E; Yozzo A; Song Y; Kohn MH; Nakhleh L
Proc Natl Acad Sci U S A; 2015 Jan; 112(1):196-201. PubMed ID: 25512534
[TBL] [Abstract][Full Text] [Related]
4. Mapping the genomic architecture of adaptive traits with interspecific introgressive origin: a coalescent-based approach.
Hejase HA; Liu KJ
BMC Genomics; 2016 Jan; 17 Suppl 1(Suppl 1):8. PubMed ID: 26819241
[TBL] [Abstract][Full Text] [Related]
5. Inferring Adaptive Introgression Using Hidden Markov Models.
Svedberg J; Shchur V; Reinman S; Nielsen R; Corbett-Detig R
Mol Biol Evol; 2021 May; 38(5):2152-2165. PubMed ID: 33502512
[TBL] [Abstract][Full Text] [Related]
6. Bayesian Inference of Reticulate Phylogenies under the Multispecies Network Coalescent.
Wen D; Yu Y; Nakhleh L
PLoS Genet; 2016 May; 12(5):e1006006. PubMed ID: 27144273
[TBL] [Abstract][Full Text] [Related]
7. Bidirectional Introgression between Mus musculus domesticus and Mus spretus.
Banker SE; Bonhomme F; Nachman MW
Genome Biol Evol; 2022 Jan; 14(1):. PubMed ID: 35038727
[TBL] [Abstract][Full Text] [Related]
8. Genome patterns of selection and introgression of haplotypes in natural populations of the house mouse (Mus musculus).
Staubach F; Lorenc A; Messer PW; Tang K; Petrov DA; Tautz D
PLoS Genet; 2012; 8(8):e1002891. PubMed ID: 22956910
[TBL] [Abstract][Full Text] [Related]
9. Large-scale introgression shapes the evolution of the mating-type chromosomes of the filamentous ascomycete Neurospora tetrasperma.
Sun Y; Corcoran P; Menkis A; Whittle CA; Andersson SG; Johannesson H
PLoS Genet; 2012; 8(7):e1002820. PubMed ID: 22844246
[TBL] [Abstract][Full Text] [Related]
10. Using hidden Markov models and observed evolution to annotate viral genomes.
McCauley S; Hein J
Bioinformatics; 2006 Jun; 22(11):1308-16. PubMed ID: 16613911
[TBL] [Abstract][Full Text] [Related]
11. Maximum likelihood inference of reticulate evolutionary histories.
Yu Y; Dong J; Liu KJ; Nakhleh L
Proc Natl Acad Sci U S A; 2014 Nov; 111(46):16448-53. PubMed ID: 25368173
[TBL] [Abstract][Full Text] [Related]
12. The NET-HMM approach: phylogenetic network inference by combining maximum likelihood and Hidden Markov Models.
Snir S; Tuller T
J Bioinform Comput Biol; 2009 Aug; 7(4):625-44. PubMed ID: 19634195
[TBL] [Abstract][Full Text] [Related]
13. Powerful methods for detecting introgressed regions from population genomic data.
Rosenzweig BK; Pease JB; Besansky NJ; Hahn MW
Mol Ecol; 2016 Jun; 25(11):2387-97. PubMed ID: 26945783
[TBL] [Abstract][Full Text] [Related]
14. Estimates of introgression as a function of pairwise distances.
Pfeifer B; Kapan DD
BMC Bioinformatics; 2019 Apr; 20(1):207. PubMed ID: 31014244
[TBL] [Abstract][Full Text] [Related]
15. A powerful regression-based method for admixture mapping of isolation across the genome of hybrids.
Gompert Z; Buerkle CA
Mol Ecol; 2009 Mar; 18(6):1207-24. PubMed ID: 19243513
[TBL] [Abstract][Full Text] [Related]
16. Selection Shapes the Genomic Landscape of Introgressed Ancestry in a Pair of Sympatric Sea Urchin Species.
Glasenapp MR; Pogson GH
Genome Biol Evol; 2024 Jun; 16(6):. PubMed ID: 38874390
[TBL] [Abstract][Full Text] [Related]
17. A Bayesian Implementation of the Multispecies Coalescent Model with Introgression for Phylogenomic Analysis.
Flouri T; Jiao X; Rannala B; Yang Z
Mol Biol Evol; 2020 Apr; 37(4):1211-1223. PubMed ID: 31825513
[TBL] [Abstract][Full Text] [Related]
18. Introgression maintains the genetic integrity of the mating-type determining chromosome of the fungus Neurospora tetrasperma.
Corcoran P; Anderson JL; Jacobson DJ; Sun Y; Ni P; Lascoux M; Johannesson H
Genome Res; 2016 Apr; 26(4):486-98. PubMed ID: 26893460
[TBL] [Abstract][Full Text] [Related]
19. Recombination Variation Shapes Phylogeny and Introgression in Wild Diploid Strawberries.
Feng C; Wang J; Liston A; Kang M
Mol Biol Evol; 2023 Mar; 40(3):. PubMed ID: 36864629
[TBL] [Abstract][Full Text] [Related]
20. Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models.
Husmeier D
Bioinformatics; 2005 Sep; 21 Suppl 2():ii166-72. PubMed ID: 16204097
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]