BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

385 related articles for article (PubMed ID: 24931998)

  • 21. SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information.
    Boetzer M; Pirovano W
    BMC Bioinformatics; 2014 Jun; 15():211. PubMed ID: 24950923
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Assembling short reads from jumping libraries with large insert sizes.
    Vasilinetc I; Prjibelski AD; Gurevich A; Korobeynikov A; Pevzner PA
    Bioinformatics; 2015 Oct; 31(20):3262-8. PubMed ID: 26040456
    [TBL] [Abstract][Full Text] [Related]  

  • 23. ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs.
    Coombe L; Nikolić V; Chu J; Birol I; Warren RL
    Bioinformatics; 2020 Jun; 36(12):3885-3887. PubMed ID: 32311025
    [TBL] [Abstract][Full Text] [Related]  

  • 24. ARAMIS: From systematic errors of NGS long reads to accurate assemblies.
    Sacristán-Horcajada E; González-de la Fuente S; Peiró-Pastor R; Carrasco-Ramiro F; Amils R; Requena JM; Berenguer J; Aguado B
    Brief Bioinform; 2021 Nov; 22(6):. PubMed ID: 34013348
    [TBL] [Abstract][Full Text] [Related]  

  • 25. GAPPadder: a sensitive approach for closing gaps on draft genomes with short sequence reads.
    Chu C; Li X; Wu Y
    BMC Genomics; 2019 Jun; 20(Suppl 5):426. PubMed ID: 31167639
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Semi-automated assembly of high-quality diploid human reference genomes.
    Jarvis ED; Formenti G; Rhie A; Guarracino A; Yang C; Wood J; Tracey A; Thibaud-Nissen F; Vollger MR; Porubsky D; Cheng H; Asri M; Logsdon GA; Carnevali P; Chaisson MJP; Chin CS; Cody S; Collins J; Ebert P; Escalona M; Fedrigo O; Fulton RS; Fulton LL; Garg S; Gerton JL; Ghurye J; Granat A; Green RE; Harvey W; Hasenfeld P; Hastie A; Haukness M; Jaeger EB; Jain M; Kirsche M; Kolmogorov M; Korbel JO; Koren S; Korlach J; Lee J; Li D; Lindsay T; Lucas J; Luo F; Marschall T; Mitchell MW; McDaniel J; Nie F; Olsen HE; Olson ND; Pesout T; Potapova T; Puiu D; Regier A; Ruan J; Salzberg SL; Sanders AD; Schatz MC; Schmitt A; Schneider VA; Selvaraj S; Shafin K; Shumate A; Stitziel NO; Stober C; Torrance J; Wagner J; Wang J; Wenger A; Xiao C; Zimin AV; Zhang G; Wang T; Li H; Garrison E; Haussler D; Hall I; Zook JM; Eichler EE; Phillippy AM; Paten B; Howe K; Miga KH;
    Nature; 2022 Nov; 611(7936):519-531. PubMed ID: 36261518
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Genome assembly using Nanopore-guided long and error-free DNA reads.
    Madoui MA; Engelen S; Cruaud C; Belser C; Bertrand L; Alberti A; Lemainque A; Wincker P; Aury JM
    BMC Genomics; 2015 Apr; 16(1):327. PubMed ID: 25927464
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Completing bacterial genome assemblies: strategy and performance comparisons.
    Liao YC; Lin SH; Lin HH
    Sci Rep; 2015 Mar; 5():8747. PubMed ID: 25735824
    [TBL] [Abstract][Full Text] [Related]  

  • 29. CSAR: a contig scaffolding tool using algebraic rearrangements.
    Chen KT; Liu CL; Huang SH; Shen HT; Shieh YK; Chiu HT; Lu CL
    Bioinformatics; 2018 Jan; 34(1):109-111. PubMed ID: 28968788
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies.
    Wetzel J; Kingsford C; Pop M
    BMC Bioinformatics; 2011 Apr; 12():95. PubMed ID: 21486487
    [TBL] [Abstract][Full Text] [Related]  

  • 31. A space and time-efficient index for the compacted colored de Bruijn graph.
    Almodaresi F; Sarkar H; Srivastava A; Patro R
    Bioinformatics; 2018 Jul; 34(13):i169-i177. PubMed ID: 29949982
    [TBL] [Abstract][Full Text] [Related]  

  • 32. A Sequence-Based Novel Approach for Quality Evaluation of Third-Generation Sequencing Reads.
    Zhang W; Huang N; Zheng J; Liao X; Wang J; Li HD
    Genes (Basel); 2019 Jan; 10(1):. PubMed ID: 30646604
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology.
    English AC; Richards S; Han Y; Wang M; Vee V; Qu J; Qin X; Muzny DM; Reid JG; Worley KC; Gibbs RA
    PLoS One; 2012; 7(11):e47768. PubMed ID: 23185243
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Improving the Completeness of Chromosome-Level Assembly by Recalling Sequences from Lost Contigs.
    Liu J; Liu F; Pan W
    Genes (Basel); 2023 Oct; 14(10):. PubMed ID: 37895275
    [TBL] [Abstract][Full Text] [Related]  

  • 35. CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes.
    Kuhl H; Li L; Wuertz S; Stöck M; Liang XF; Klopp C
    Gigascience; 2020 May; 9(5):. PubMed ID: 32449778
    [TBL] [Abstract][Full Text] [Related]  

  • 36. TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads.
    Xu M; Guo L; Gu S; Wang O; Zhang R; Peters BA; Fan G; Liu X; Xu X; Deng L; Zhang Y
    Gigascience; 2020 Sep; 9(9):. PubMed ID: 32893860
    [TBL] [Abstract][Full Text] [Related]  

  • 37. SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies.
    Yang LA; Chang YJ; Chen SH; Lin CY; Ho JM
    BMC Genomics; 2019 Apr; 19(Suppl 9):238. PubMed ID: 30999844
    [TBL] [Abstract][Full Text] [Related]  

  • 38. De novo likelihood-based measures for comparing genome assemblies.
    Ghodsi M; Hill CM; Astrovskaya I; Lin H; Sommer DD; Koren S; Pop M
    BMC Res Notes; 2013 Aug; 6():334. PubMed ID: 23965294
    [TBL] [Abstract][Full Text] [Related]  

  • 39. A pipeline for local assembly of minisatellite alleles from single-molecule sequencing data.
    Ogeh D; Badge R
    Bioinformatics; 2017 Mar; 33(5):650-653. PubMed ID: 27998939
    [TBL] [Abstract][Full Text] [Related]  

  • 40. ReMILO: reference assisted misassembly detection algorithm using short and long reads.
    Bao E; Song C; Lan L
    Bioinformatics; 2018 Jan; 34(1):24-32. PubMed ID: 28961789
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 20.