BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

154 related articles for article (PubMed ID: 24931999)

  • 1. Stochastic EM-based TFBS motif discovery with MITSU.
    Kilpatrick AM; Ward B; Aitken S
    Bioinformatics; 2014 Jun; 30(12):i310-8. PubMed ID: 24931999
    [TBL] [Abstract][Full Text] [Related]  

  • 2. EXTREME: an online EM algorithm for motif discovery.
    Quang D; Xie X
    Bioinformatics; 2014 Jun; 30(12):1667-73. PubMed ID: 24532725
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A Monte Carlo EM algorithm for de novo motif discovery in biomolecular sequences.
    Bi C
    IEEE/ACM Trans Comput Biol Bioinform; 2009; 6(3):370-86. PubMed ID: 19644166
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Sequential Integration of Fuzzy Clustering and Expectation Maximization for Transcription Factor Binding Site Identification.
    Yousefian-Jazi A; Choi J
    J Comput Biol; 2018 Nov; 25(11):1247-1256. PubMed ID: 30133315
    [TBL] [Abstract][Full Text] [Related]  

  • 5. STEME: efficient EM to find motifs in large data sets.
    Reid JE; Wernisch L
    Nucleic Acids Res; 2011 Oct; 39(18):e126. PubMed ID: 21785132
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A fast weak motif-finding algorithm based on community detection in graphs.
    Jia C; Carson MB; Yu J
    BMC Bioinformatics; 2013 Jul; 14():227. PubMed ID: 23865838
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A study on the application of topic models to motif finding algorithms.
    Basha Gutierrez J; Nakai K
    BMC Bioinformatics; 2016 Dec; 17(Suppl 19):502. PubMed ID: 28155646
    [TBL] [Abstract][Full Text] [Related]  

  • 8. HIGEDA: a hierarchical gene-set genetics based algorithm for finding subtle motifs in biological sequences.
    Le T; Altman T; Gardiner K
    Bioinformatics; 2010 Feb; 26(3):302-9. PubMed ID: 19996163
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A cluster refinement algorithm for motif discovery.
    Li G; Chan TM; Leung KS; Lee KH
    IEEE/ACM Trans Comput Biol Bioinform; 2010; 7(4):654-68. PubMed ID: 21030733
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MotifLab: a tools and data integration workbench for motif discovery and regulatory sequence analysis.
    Klepper K; Drabløs F
    BMC Bioinformatics; 2013 Jan; 14():9. PubMed ID: 23323883
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The value of position-specific priors in motif discovery using MEME.
    Bailey TL; Bodén M; Whitington T; Machanick P
    BMC Bioinformatics; 2010 Apr; 11():179. PubMed ID: 20380693
    [TBL] [Abstract][Full Text] [Related]  

  • 12. MotifCut: regulatory motifs finding with maximum density subgraphs.
    Fratkin E; Naughton BT; Brutlag DL; Batzoglou S
    Bioinformatics; 2006 Jul; 22(14):e150-7. PubMed ID: 16873465
    [TBL] [Abstract][Full Text] [Related]  

  • 13. On the detection and refinement of transcription factor binding sites using ChIP-Seq data.
    Hu M; Yu J; Taylor JM; Chinnaiyan AM; Qin ZS
    Nucleic Acids Res; 2010 Apr; 38(7):2154-67. PubMed ID: 20056654
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Hybrid Gibbs-sampling algorithm for challenging motif discovery: GibbsDST.
    Shida K
    Genome Inform; 2006; 17(2):3-13. PubMed ID: 17503374
    [TBL] [Abstract][Full Text] [Related]  

  • 15. An Affinity Propagation-Based DNA Motif Discovery Algorithm.
    Sun C; Huo H; Yu Q; Guo H; Sun Z
    Biomed Res Int; 2015; 2015():853461. PubMed ID: 26347887
    [TBL] [Abstract][Full Text] [Related]  

  • 16. GSMC: Combining Parallel Gibbs Sampling with Maximal Cliques for Hunting DNA Motif.
    Pei C; Wang SL; Fang J; Zhang W
    J Comput Biol; 2017 Dec; 24(12):1243-1253. PubMed ID: 29116820
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A Monte Carlo-based framework enhances the discovery and interpretation of regulatory sequence motifs.
    Seitzer P; Wilbanks EG; Larsen DJ; Facciotti MT
    BMC Bioinformatics; 2012 Nov; 13():317. PubMed ID: 23181585
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites.
    Naughton BT; Fratkin E; Batzoglou S; Brutlag DL
    Nucleic Acids Res; 2006; 34(20):5730-9. PubMed ID: 17041233
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Searching for statistically significant regulatory modules.
    Bailey TL; Noble WS
    Bioinformatics; 2003 Oct; 19 Suppl 2():ii16-25. PubMed ID: 14534166
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Limitations and potentials of current motif discovery algorithms.
    Hu J; Li B; Kihara D
    Nucleic Acids Res; 2005; 33(15):4899-913. PubMed ID: 16284194
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.