These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

110 related articles for article (PubMed ID: 24936875)

  • 21. HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data.
    Yan H; Evans J; Kalmbach M; Moore R; Middha S; Luban S; Wang L; Bhagwate A; Li Y; Sun Z; Chen X; Kocher JP
    BMC Bioinformatics; 2014 Aug; 15(1):280. PubMed ID: 25128017
    [TBL] [Abstract][Full Text] [Related]  

  • 22. A novel statistical method for quantitative comparison of multiple ChIP-seq datasets.
    Chen L; Wang C; Qin ZS; Wu H
    Bioinformatics; 2015 Jun; 31(12):1889-96. PubMed ID: 25682068
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Nuclear compartments, genome folding, and enhancer-promoter communication.
    Ulianov SV; Gavrilov AA; Razin SV
    Int Rev Cell Mol Biol; 2015; 315():183-244. PubMed ID: 25708464
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression.
    Libbrecht MW; Ay F; Hoffman MM; Gilbert DM; Bilmes JA; Noble WS
    Genome Res; 2015 Apr; 25(4):544-57. PubMed ID: 25677182
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Detecting differential peaks in ChIP-seq signals with ODIN.
    Allhoff M; Seré K; Chauvistré H; Lin Q; Zenke M; Costa IG
    Bioinformatics; 2015 Mar; 31(6):980. PubMed ID: 25673339
    [No Abstract]   [Full Text] [Related]  

  • 26. Chromatin immunoprecipitation with fixed animal tissues and preparation for high-throughput sequencing.
    Cotney JL; Noonan JP
    Cold Spring Harb Protoc; 2015 Feb; 2015(2):191-9. PubMed ID: 25646502
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions.
    Grubert F; Zaugg JB; Kasowski M; Ursu O; Spacek DV; Martin AR; Greenside P; Srivas R; Phanstiel DH; Pekowska A; Heidari N; Euskirchen G; Huber W; Pritchard JK; Bustamante CD; Steinmetz LM; Kundaje A; Snyder M
    Cell; 2015 Aug; 162(5):1051-65. PubMed ID: 26300125
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Using epigenomics data to predict gene expression in lung cancer.
    Li J; Ching T; Huang S; Garmire LX
    BMC Bioinformatics; 2015; 16 Suppl 5(Suppl 5):S10. PubMed ID: 25861082
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Rapid epigenetic adaptation to uncontrolled heterochromatin spreading.
    Wang J; Reddy BD; Jia S
    Elife; 2015 Mar; 4():. PubMed ID: 25774602
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Nonparametric Tests for Differential Histone Enrichment with ChIP-Seq Data.
    Wu Q; Won KJ; Li H
    Cancer Inform; 2015; 14(Suppl 1):11-22. PubMed ID: 25657574
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Role of ChIP-seq in the discovery of transcription factor binding sites, differential gene regulation mechanism, epigenetic marks and beyond.
    Mundade R; Ozer HG; Wei H; Prabhu L; Lu T
    Cell Cycle; 2014; 13(18):2847-52. PubMed ID: 25486472
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Detecting differential peaks in ChIP-seq signals with ODIN.
    Allhoff M; Seré K; Chauvistré H; Lin Q; Zenke M; Costa IG
    Bioinformatics; 2014 Dec; 30(24):3467-75. PubMed ID: 25371479
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Challenges and best practices in omics benchmarking.
    Brooks TG; Lahens NF; Mrčela A; Grant GR
    Nat Rev Genet; 2024 May; 25(5):326-339. PubMed ID: 38216661
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Analysis of super-enhancer using machine learning and its application to medical biology.
    Hamamoto R; Takasawa K; Shinkai N; Machino H; Kouno N; Asada K; Komatsu M; Kaneko S
    Brief Bioinform; 2023 May; 24(3):. PubMed ID: 36960780
    [TBL] [Abstract][Full Text] [Related]  

  • 35. An Optimized ChIP-Seq Protocol to Determine Chromatin Binding of Estrogen Receptor Beta.
    Indukuri R; Damdimopoulos A; Williams C
    Methods Mol Biol; 2022; 2418():203-221. PubMed ID: 35119668
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Genome-wide analysis of primary microRNA expression using H3K36me3 ChIP-seq data.
    Turunen T; Hernández de Sande A; Pölönen P; Heinäniemi M
    Comput Struct Biotechnol J; 2021; 19():1944-1955. PubMed ID: 33995896
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Genome-wide histone modification profiling of inner cell mass and trophectoderm of bovine blastocysts by RAT-ChIP.
    Org T; Hensen K; Kreevan R; Mark E; Sarv O; Andreson R; Jaakma Ü; Salumets A; Kurg A
    PLoS One; 2019; 14(11):e0225801. PubMed ID: 31765427
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Chromatin Conformation Links Putative Enhancers in Intracranial Aneurysm-Associated Regions to Potential Candidate Genes.
    Laarman MD; Geeven G; Barnett P; ; Rinkel GJE; de Laat W; Ruigrok YM; Bakkers J
    J Am Heart Assoc; 2019 May; 8(9):e011201. PubMed ID: 30994044
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Spatiotemporal regulation of enhancers during cardiogenesis.
    Dupays L; Mohun T
    Cell Mol Life Sci; 2017 Jan; 74(2):257-265. PubMed ID: 27497925
    [TBL] [Abstract][Full Text] [Related]  

  • 40. EMERGE: a flexible modelling framework to predict genomic regulatory elements from genomic signatures.
    van Duijvenboden K; de Boer BA; Capon N; Ruijter JM; Christoffels VM
    Nucleic Acids Res; 2016 Mar; 44(5):e42. PubMed ID: 26531828
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 6.