195 related articles for article (PubMed ID: 24939130)
1. Metaproteomics: extracting and mining proteome information to characterize metabolic activities in microbial communities.
Abraham PE; Giannone RJ; Xiong W; Hettich RL
Curr Protoc Bioinformatics; 2014 Jun; 46():13.26.1-13.26.14. PubMed ID: 24939130
[TBL] [Abstract][Full Text] [Related]
2. High-throughput metaproteomics data analysis with Unipept: A tutorial.
Mesuere B; Van der Jeugt F; Willems T; Naessens T; Devreese B; Martens L; Dawyndt P
J Proteomics; 2018 Jan; 171():11-22. PubMed ID: 28552653
[TBL] [Abstract][Full Text] [Related]
3. Function is what counts: how microbial community complexity affects species, proteome and pathway coverage in metaproteomics.
Lohmann P; Schäpe SS; Haange SB; Oliphant K; Allen-Vercoe E; Jehmlich N; Von Bergen M
Expert Rev Proteomics; 2020 Feb; 17(2):163-173. PubMed ID: 32174200
[No Abstract] [Full Text] [Related]
4. Marine metaproteomics: current status and future directions.
Wang DZ; Xie ZX; Zhang SF
J Proteomics; 2014 Jan; 97():27-35. PubMed ID: 24041543
[TBL] [Abstract][Full Text] [Related]
5. Microbial metaproteomics for characterizing the range of metabolic functions and activities of human gut microbiota.
Xiong W; Abraham PE; Li Z; Pan C; Hettich RL
Proteomics; 2015 Oct; 15(20):3424-38. PubMed ID: 25914197
[TBL] [Abstract][Full Text] [Related]
6. Considerations for constructing a protein sequence database for metaproteomics.
Blakeley-Ruiz JA; Kleiner M
Comput Struct Biotechnol J; 2022; 20():937-952. PubMed ID: 35242286
[TBL] [Abstract][Full Text] [Related]
7. Metaproteomics: Sample Preparation and Methodological Considerations.
Kunath BJ; Minniti G; Skaugen M; Hagen LH; Vaaje-Kolstad G; Eijsink VGH; Pope PB; Arntzen MØ
Adv Exp Med Biol; 2019; 1073():187-215. PubMed ID: 31236844
[TBL] [Abstract][Full Text] [Related]
8. A complete and flexible workflow for metaproteomics data analysis based on MetaProteomeAnalyzer and Prophane.
Schiebenhoefer H; Schallert K; Renard BY; Trappe K; Schmid E; Benndorf D; Riedel K; Muth T; Fuchs S
Nat Protoc; 2020 Oct; 15(10):3212-3239. PubMed ID: 32859984
[TBL] [Abstract][Full Text] [Related]
9. Bioinformatic progress and applications in metaproteogenomics for bridging the gap between genomic sequences and metabolic functions in microbial communities.
Seifert J; Herbst FA; Halkjaer Nielsen P; Planes FJ; Jehmlich N; Ferrer M; von Bergen M
Proteomics; 2013 Oct; 13(18-19):2786-804. PubMed ID: 23625762
[TBL] [Abstract][Full Text] [Related]
10. Metaproteomics of Freshwater Microbial Communities.
Russo DA; Couto N; Beckerman AP; Pandhal J
Methods Mol Biol; 2019; 1977():145-155. PubMed ID: 30980327
[TBL] [Abstract][Full Text] [Related]
11. Potential and active functions in the gut microbiota of a healthy human cohort.
Tanca A; Abbondio M; Palomba A; Fraumene C; Manghina V; Cucca F; Fiorillo E; Uzzau S
Microbiome; 2017 Jul; 5(1):79. PubMed ID: 28709472
[TBL] [Abstract][Full Text] [Related]
12. A decade of metaproteomics: where we stand and what the future holds.
Wilmes P; Heintz-Buschart A; Bond PL
Proteomics; 2015 Oct; 15(20):3409-17. PubMed ID: 26315987
[TBL] [Abstract][Full Text] [Related]
13. Metagenomic Taxonomy-Guided Database-Searching Strategy for Improving Metaproteomic Analysis.
Xiao J; Tanca A; Jia B; Yang R; Wang B; Zhang Y; Li J
J Proteome Res; 2018 Apr; 17(4):1596-1605. PubMed ID: 29436230
[TBL] [Abstract][Full Text] [Related]
14. Database selection for shotgun metaproteomic of low-diversity dairy microbiomes.
da Silva Duarte V; de Paula Dias Moreira L; Skeie SB; Svalestad F; Øyaas J; Porcellato D
Int J Food Microbiol; 2024 Jun; 418():110706. PubMed ID: 38696985
[TBL] [Abstract][Full Text] [Related]
15. Quantitative metaproteomics: functional insights into microbial communities.
Pan C; Banfield JF
Methods Mol Biol; 2014; 1096():231-40. PubMed ID: 24515373
[TBL] [Abstract][Full Text] [Related]
16. mPies: a novel metaproteomics tool for the creation of relevant protein databases and automatized protein annotation.
Werner J; Géron A; Kerssemakers J; Matallana-Surget S
Biol Direct; 2019 Nov; 14(1):21. PubMed ID: 31727118
[TBL] [Abstract][Full Text] [Related]
17. ProteoStorm: An Ultrafast Metaproteomics Database Search Framework.
Beyter D; Lin MS; Yu Y; Pieper R; Bafna V
Cell Syst; 2018 Oct; 7(4):463-467.e6. PubMed ID: 30268435
[TBL] [Abstract][Full Text] [Related]
18. Genome-resolved metaproteomic characterization of preterm infant gut microbiota development reveals species-specific metabolic shifts and variabilities during early life.
Xiong W; Brown CT; Morowitz MJ; Banfield JF; Hettich RL
Microbiome; 2017 Jul; 5(1):72. PubMed ID: 28693612
[TBL] [Abstract][Full Text] [Related]
19. Using proteins to study how microbes contribute to soil ecosystem services: The current state and future perspectives of soil metaproteomics.
Starke R; Jehmlich N; Bastida F
J Proteomics; 2019 Apr; 198():50-58. PubMed ID: 30445181
[TBL] [Abstract][Full Text] [Related]
20. Sipros Ensemble improves database searching and filtering for complex metaproteomics.
Guo X; Li Z; Yao Q; Mueller RS; Eng JK; Tabb DL; Hervey WJ; Pan C
Bioinformatics; 2018 Mar; 34(5):795-802. PubMed ID: 29028897
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
