105 related articles for article (PubMed ID: 24947802)
1. Uncovering allosteric pathways in caspase-1 using Markov transient analysis and multiscale community detection.
Amor B; Yaliraki SN; Woscholski R; Barahona M
Mol Biosyst; 2014 Aug; 10(8):2247-58. PubMed ID: 24947802
[TBL] [Abstract][Full Text] [Related]
2. Prediction of Protein Allosteric Signalling Pathways and Functional Residues Through Paths of Optimised Propensity.
Wu N; Yaliraki SN; Barahona M
J Mol Biol; 2022 Sep; 434(17):167749. PubMed ID: 35841931
[TBL] [Abstract][Full Text] [Related]
3. Allosteric pathway identification through network analysis: from molecular dynamics simulations to interactive 2D and 3D graphs.
Allain A; Chauvot de Beauchêne I; Langenfeld F; Guarracino Y; Laine E; Tchertanov L
Faraday Discuss; 2014; 169():303-21. PubMed ID: 25340971
[TBL] [Abstract][Full Text] [Related]
4. ProteinLens: a web-based application for the analysis of allosteric signalling on atomistic graphs of biomolecules.
Mersmann SF; Strömich L; Song FJ; Wu N; Vianello F; Barahona M; Yaliraki SN
Nucleic Acids Res; 2021 Jul; 49(W1):W551-W558. PubMed ID: 33978752
[TBL] [Abstract][Full Text] [Related]
5. Exploiting protein flexibility to predict the location of allosteric sites.
Panjkovich A; Daura X
BMC Bioinformatics; 2012 Oct; 13():273. PubMed ID: 23095452
[TBL] [Abstract][Full Text] [Related]
6. Improved Method for the Identification and Validation of Allosteric Sites.
Song K; Liu X; Huang W; Lu S; Shen Q; Zhang L; Zhang J
J Chem Inf Model; 2017 Sep; 57(9):2358-2363. PubMed ID: 28825477
[TBL] [Abstract][Full Text] [Related]
7. Sparse networks of directly coupled, polymorphic, and functional side chains in allosteric proteins.
Soltan Ghoraie L; Burkowski F; Zhu M
Proteins; 2015 Mar; 83(3):497-516. PubMed ID: 25545075
[TBL] [Abstract][Full Text] [Related]
8. Allosteric mechanism of the circadian protein Vivid resolved through Markov state model and machine learning analysis.
Zhou H; Dong Z; Verkhivker G; Zoltowski BD; Tao P
PLoS Comput Biol; 2019 Feb; 15(2):e1006801. PubMed ID: 30779735
[TBL] [Abstract][Full Text] [Related]
9. Prediction of allosteric sites and mediating interactions through bond-to-bond propensities.
Amor BR; Schaub MT; Yaliraki SN; Barahona M
Nat Commun; 2016 Aug; 7():12477. PubMed ID: 27561351
[TBL] [Abstract][Full Text] [Related]
10. Correlating allostery with rigidity.
Rader AJ; Brown SM
Mol Biosyst; 2011 Feb; 7(2):464-71. PubMed ID: 21060909
[TBL] [Abstract][Full Text] [Related]
11. Quantifying information transfer by protein domains: analysis of the Fyn SH2 domain structure.
Lenaerts T; Ferkinghoff-Borg J; Stricher F; Serrano L; Schymkowitz JW; Rousseau F
BMC Struct Biol; 2008 Oct; 8():43. PubMed ID: 18842137
[TBL] [Abstract][Full Text] [Related]
12. Looking for a sequence based allostery definition: a statistical journey at different resolution scales.
Namboodiri S; Giuliani A; Nair AS; Dhar PK
J Theor Biol; 2012 Jul; 304():211-8. PubMed ID: 22484347
[TBL] [Abstract][Full Text] [Related]
13. Coupling between global dynamics and signal transduction pathways: a mechanism of allostery for chaperonin GroEL.
Chennubhotla C; Yang Z; Bahar I
Mol Biosyst; 2008 Apr; 4(4):287-92. PubMed ID: 18354781
[TBL] [Abstract][Full Text] [Related]
14. Identification of potential allosteric communication pathways between functional sites of the bacterial ribosome by graph and elastic network models.
Guzel P; Kurkcuoglu O
Biochim Biophys Acta Gen Subj; 2017 Dec; 1861(12):3131-3141. PubMed ID: 28917952
[TBL] [Abstract][Full Text] [Related]
15. HPC Analysis of Multiple Binding Sites Communication and Allosteric Modulations in Drug Design: The HSP Case Study.
Chiappori F; Milanesi L; Merelli I
Curr Drug Targets; 2016; 17(14):1610-1625. PubMed ID: 26648062
[TBL] [Abstract][Full Text] [Related]
16. Allosteric Hotspots in the Main Protease of SARS-CoV-2.
Strömich L; Wu N; Barahona M; Yaliraki SN
J Mol Biol; 2022 Sep; 434(17):167748. PubMed ID: 35843284
[TBL] [Abstract][Full Text] [Related]
17. Modeling allosteric signal propagation using protein structure networks.
Park K; Kim D
BMC Bioinformatics; 2011 Feb; 12 Suppl 1(Suppl 1):S23. PubMed ID: 21342553
[TBL] [Abstract][Full Text] [Related]
18. An allosteric circuit in caspase-1.
Datta D; Scheer JM; Romanowski MJ; Wells JA
J Mol Biol; 2008 Sep; 381(5):1157-67. PubMed ID: 18590738
[TBL] [Abstract][Full Text] [Related]
19. Prediction of allosteric communication pathways in proteins.
Haliloglu T; Hacisuleyman A; Erman B
Bioinformatics; 2022 Jul; 38(14):3590-3599. PubMed ID: 35674396
[TBL] [Abstract][Full Text] [Related]
20. Direct coupling analysis of epistasis in allosteric materials.
Bravi B; Ravasio R; Brito C; Wyart M
PLoS Comput Biol; 2020 Mar; 16(3):e1007630. PubMed ID: 32119660
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]