These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

277 related articles for article (PubMed ID: 24949246)

  • 1. dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms.
    Puritz JB; Hollenbeck CM; Gold JR
    PeerJ; 2014; 2():e431. PubMed ID: 24949246
    [TBL] [Abstract][Full Text] [Related]  

  • 2. gmRAD: an integrated SNP calling pipeline for genetic mapping with RADseq across a hybrid population.
    Yao D; Wu H; Chen Y; Yang W; Gao H; Tong C
    Brief Bioinform; 2020 Jan; 21(1):329-337. PubMed ID: 30445432
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PyRAD: assembly of de novo RADseq loci for phylogenetic analyses.
    Eaton DA
    Bioinformatics; 2014 Jul; 30(13):1844-9. PubMed ID: 24603985
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A reference-free approach to analyse RADseq data using standard next generation sequencing toolkits.
    Heller R; Nursyifa C; Garcia-Erill G; Salmona J; Chikhi L; Meisner J; Korneliussen TS; Albrechtsen A
    Mol Ecol Resour; 2021 May; 21(4):1085-1097. PubMed ID: 33434329
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Read trimming has minimal effect on bacterial SNP-calling accuracy.
    Bush SJ
    Microb Genom; 2020 Dec; 6(12):. PubMed ID: 33332257
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Stacks 2: Analytical methods for paired-end sequencing improve RADseq-based population genomics.
    Rochette NC; Rivera-Colón AG; Catchen JM
    Mol Ecol; 2019 Nov; 28(21):4737-4754. PubMed ID: 31550391
    [TBL] [Abstract][Full Text] [Related]  

  • 7. AftrRAD: a pipeline for accurate and efficient de novo assembly of RADseq data.
    Sovic MG; Fries AC; Gibbs HL
    Mol Ecol Resour; 2015 Sep; 15(5):1163-71. PubMed ID: 25641221
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Experimental validation of in silico predicted RAD locus frequencies using genomic resources and short read data from a model marine mammal.
    Vendrami DLJ; Forcada J; Hoffman JI
    BMC Genomics; 2019 Jan; 20(1):72. PubMed ID: 30669975
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly.
    Li H
    Bioinformatics; 2012 Jul; 28(14):1838-44. PubMed ID: 22569178
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Software for pre-processing Illumina next-generation sequencing short read sequences.
    Chen C; Khaleel SS; Huang H; Wu CH
    Source Code Biol Med; 2014; 9():8. PubMed ID: 24955109
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Phylogenomic inferences from reference-mapped and de novo assembled short-read sequence data using RADseq sequencing of California white oaks (Quercus section Quercus).
    Fitz-Gibbon S; Hipp AL; Pham KK; Manos PS; Sork VL
    Genome; 2017 Sep; 60(9):743-755. PubMed ID: 28355490
    [TBL] [Abstract][Full Text] [Related]  

  • 12. UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study.
    Qi P; Gimode D; Saha D; Schröder S; Chakraborty D; Wang X; Dida MM; Malmberg RL; Devos KM
    BMC Plant Biol; 2018 Jun; 18(1):117. PubMed ID: 29902967
    [TBL] [Abstract][Full Text] [Related]  

  • 13. KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes.
    Steiner A; Stucki D; Coscolla M; Borrell S; Gagneux S
    BMC Genomics; 2014 Oct; 15(1):881. PubMed ID: 25297886
    [TBL] [Abstract][Full Text] [Related]  

  • 14. WEP: a high-performance analysis pipeline for whole-exome data.
    D'Antonio M; D'Onorio De Meo P; Paoletti D; Elmi B; Pallocca M; Sanna N; Picardi E; Pesole G; Castrignanò T
    BMC Bioinformatics; 2013; 14 Suppl 7(Suppl 7):S11. PubMed ID: 23815231
    [TBL] [Abstract][Full Text] [Related]  

  • 15. RADProc: A computationally efficient de novo locus assembler for population studies using RADseq data.
    Nadukkalam Ravindran P; Bentzen P; Bradbury IR; Beiko RG
    Mol Ecol Resour; 2019 Jan; 19(1):272-282. PubMed ID: 30312001
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Low impact of different SNP panels from two building-loci pipelines on RAD-Seq population genomic metrics: case study on five diverse aquatic species.
    Casanova A; Maroso F; Blanco A; Hermida M; Ríos N; García G; Manuzzi A; Zane L; Verissimo A; García-Marín JL; Bouza C; Vera M; Martínez P
    BMC Genomics; 2021 Mar; 22(1):150. PubMed ID: 33653268
    [TBL] [Abstract][Full Text] [Related]  

  • 17. ADMIXPIPE: population analyses in ADMIXTURE for non-model organisms.
    Mussmann SM; Douglas MR; Chafin TK; Douglas ME
    BMC Bioinformatics; 2020 Jul; 21(1):337. PubMed ID: 32727359
    [TBL] [Abstract][Full Text] [Related]  

  • 18. An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome.
    Ribeiro A; Golicz A; Hackett CA; Milne I; Stephen G; Marshall D; Flavell AJ; Bayer M
    BMC Bioinformatics; 2015 Nov; 16():382. PubMed ID: 26558718
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Altools: a user friendly NGS data analyser.
    Camiolo S; Sablok G; Porceddu A
    Biol Direct; 2016 Feb; 11(1):8. PubMed ID: 26883204
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Evaluation of variant calling tools for large plant genome re-sequencing.
    Yao Z; You FM; N'Diaye A; Knox RE; McCartney C; Hiebert CW; Pozniak C; Xu W
    BMC Bioinformatics; 2020 Aug; 21(1):360. PubMed ID: 32807073
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.