These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

179 related articles for article (PubMed ID: 24969746)

  • 21. Prediction of RNA secondary structure with pseudoknots using integer programming.
    Poolsap U; Kato Y; Akutsu T
    BMC Bioinformatics; 2009 Jan; 10 Suppl 1(Suppl 1):S38. PubMed ID: 19208139
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Predicting RNA secondary structures with arbitrary pseudoknots by maximizing the number of stacking pairs.
    Ieong S; Kao MY; Lam TW; Sung WK; Yiu SM
    J Comput Biol; 2003; 10(6):981-95. PubMed ID: 14980021
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots.
    Song Y; Liu C; Malmberg RL; He C; Cai L
    Int J Bioinform Res Appl; 2006; 2(3):289-304. PubMed ID: 18048167
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Prediction of consensus RNA secondary structures including pseudoknots.
    Witwer C; Hofacker IL; Stadler PF
    IEEE/ACM Trans Comput Biol Bioinform; 2004; 1(2):66-77. PubMed ID: 17048382
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Designing Deep Learning Hardware Accelerator and Efficiency Evaluation.
    Qi Z; Chen W; Naqvi RA; Siddique K
    Comput Intell Neurosci; 2022; 2022():1291103. PubMed ID: 35875766
    [TBL] [Abstract][Full Text] [Related]  

  • 26. pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows.
    Reeder J; Steffen P; Giegerich R
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W320-4. PubMed ID: 17478505
    [TBL] [Abstract][Full Text] [Related]  

  • 27. KnotSeeker: heuristic pseudoknot detection in long RNA sequences.
    Sperschneider J; Datta A
    RNA; 2008 Apr; 14(4):630-40. PubMed ID: 18314500
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Secondary structure prediction of interacting RNA molecules.
    Andronescu M; Zhang ZC; Condon A
    J Mol Biol; 2005 Feb; 345(5):987-1001. PubMed ID: 15644199
    [TBL] [Abstract][Full Text] [Related]  

  • 29. RNA Visualization: Relevance and the Current State-of-the-Art Focusing on Pseudoknots.
    Shabash B; Wiese KC
    IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(3):696-712. PubMed ID: 26915129
    [TBL] [Abstract][Full Text] [Related]  

  • 30. The computer simulation of RNA folding involving pseudoknot formation.
    Gultyaev AP
    Nucleic Acids Res; 1991 May; 19(9):2489-94. PubMed ID: 1710358
    [TBL] [Abstract][Full Text] [Related]  

  • 31. PseudoViewer: web application and web service for visualizing RNA pseudoknots and secondary structures.
    Byun Y; Han K
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W416-22. PubMed ID: 16845039
    [TBL] [Abstract][Full Text] [Related]  

  • 32. New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation.
    Antczak M; Popenda M; Zok T; Zurkowski M; Adamiak RW; Szachniuk M
    Bioinformatics; 2018 Apr; 34(8):1304-1312. PubMed ID: 29236971
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Secondary Structure Prediction of Single Sequences Using RNAstructure.
    Xu ZZ; Mathews DH
    Methods Mol Biol; 2016; 1490():15-34. PubMed ID: 27665590
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Accelerated probabilistic inference of RNA structure evolution.
    Holmes I
    BMC Bioinformatics; 2005 Mar; 6():73. PubMed ID: 15790387
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Recent advances in RNA folding.
    Fallmann J; Will S; Engelhardt J; GrĂ¼ning B; Backofen R; Stadler PF
    J Biotechnol; 2017 Nov; 261():97-104. PubMed ID: 28690134
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations.
    Xayaphoummine A; Bucher T; Thalmann F; Isambert H
    Proc Natl Acad Sci U S A; 2003 Dec; 100(26):15310-5. PubMed ID: 14676318
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Cotranscriptional Kinetic Folding of RNA Secondary Structures Including Pseudoknots.
    Thanh VH; Korpela D; Orponen P
    J Comput Biol; 2021 Sep; 28(9):892-908. PubMed ID: 33902324
    [No Abstract]   [Full Text] [Related]  

  • 38. Novel and efficient RNA secondary structure prediction using hierarchical folding.
    Jabbari H; Condon A; Zhao S
    J Comput Biol; 2008 Mar; 15(2):139-63. PubMed ID: 18312147
    [TBL] [Abstract][Full Text] [Related]  

  • 39. SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction.
    Boniecki MJ; Lach G; Dawson WK; Tomala K; Lukasz P; Soltysinski T; Rother KM; Bujnicki JM
    Nucleic Acids Res; 2016 Apr; 44(7):e63. PubMed ID: 26687716
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
    Matsui H; Sato K; Sakakibara Y
    Proc IEEE Comput Syst Bioinform Conf; 2004; ():290-9. PubMed ID: 16448022
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.