136 related articles for article (PubMed ID: 24982428)
1. COSMOS: Python library for massively parallel workflows.
Gafni E; Luquette LJ; Lancaster AK; Hawkins JB; Jung JY; Souilmi Y; Wall DP; Tonellato PJ
Bioinformatics; 2014 Oct; 30(20):2956-8. PubMed ID: 24982428
[TBL] [Abstract][Full Text] [Related]
2. Aether: leveraging linear programming for optimal cloud computing in genomics.
Luber JM; Tierney BT; Cofer EM; Patel CJ; Kostic AD
Bioinformatics; 2018 May; 34(9):1565-1567. PubMed ID: 29228186
[TBL] [Abstract][Full Text] [Related]
3. Closha: bioinformatics workflow system for the analysis of massive sequencing data.
Ko G; Kim PG; Yoon J; Han G; Park SJ; Song W; Lee B
BMC Bioinformatics; 2018 Feb; 19(Suppl 1):43. PubMed ID: 29504905
[TBL] [Abstract][Full Text] [Related]
4. Mutadelic: mutation analysis using description logic inferencing capabilities.
Holford ME; Krauthammer M
Bioinformatics; 2015 Dec; 31(23):3742-7. PubMed ID: 26272983
[TBL] [Abstract][Full Text] [Related]
5. REDItools: high-throughput RNA editing detection made easy.
Picardi E; Pesole G
Bioinformatics; 2013 Jul; 29(14):1813-4. PubMed ID: 23742983
[TBL] [Abstract][Full Text] [Related]
6. PGP: parallel prokaryotic proteogenomics pipeline for MPI clusters, high-throughput batch clusters and multicore workstations.
Tovchigrechko A; Venepally P; Payne SH
Bioinformatics; 2014 May; 30(10):1469-70. PubMed ID: 24470574
[TBL] [Abstract][Full Text] [Related]
7. BigDataScript: a scripting language for data pipelines.
Cingolani P; Sladek R; Blanchette M
Bioinformatics; 2015 Jan; 31(1):10-6. PubMed ID: 25189778
[TBL] [Abstract][Full Text] [Related]
8. A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines.
Cieślik M; Mura C
BMC Bioinformatics; 2011 Feb; 12():61. PubMed ID: 21352538
[TBL] [Abstract][Full Text] [Related]
9. Seq2pathway: an R/Bioconductor package for pathway analysis of next-generation sequencing data.
Wang B; Cunningham JM; Yang XH
Bioinformatics; 2015 Sep; 31(18):3043-5. PubMed ID: 25979472
[TBL] [Abstract][Full Text] [Related]
10. piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing.
Han BW; Wang W; Zamore PD; Weng Z
Bioinformatics; 2015 Feb; 31(4):593-5. PubMed ID: 25342065
[TBL] [Abstract][Full Text] [Related]
11. Galaxy LIMS for next-generation sequencing.
Scholtalbers J; Rößler J; Sorn P; de Graaf J; Boisguérin V; Castle J; Sahin U
Bioinformatics; 2013 May; 29(9):1233-4. PubMed ID: 23479349
[TBL] [Abstract][Full Text] [Related]
12. HIPPIE: a high-throughput identification pipeline for promoter interacting enhancer elements.
Hwang YC; Lin CF; Valladares O; Malamon J; Kuksa PP; Zheng Q; Gregory BD; Wang LS
Bioinformatics; 2015 Apr; 31(8):1290-2. PubMed ID: 25480377
[TBL] [Abstract][Full Text] [Related]
13. Plastid: nucleotide-resolution analysis of next-generation sequencing and genomics data.
Dunn JG; Weissman JS
BMC Genomics; 2016 Nov; 17(1):958. PubMed ID: 27875984
[TBL] [Abstract][Full Text] [Related]
14. An automated workflow for parallel processing of large multiview SPIM recordings.
Schmied C; Steinbach P; Pietzsch T; Preibisch S; Tomancak P
Bioinformatics; 2016 Apr; 32(7):1112-4. PubMed ID: 26628585
[TBL] [Abstract][Full Text] [Related]
15. Optimizing performance of GATK workflows using Apache Arrow In-Memory data framework.
Ahmad T; Ahmed N; Al-Ars Z; Hofstee HP
BMC Genomics; 2020 Nov; 21(Suppl 10):683. PubMed ID: 33208101
[TBL] [Abstract][Full Text] [Related]
16. Nozzle: a report generation toolkit for data analysis pipelines.
Gehlenborg N; Noble MS; Getz G; Chin L; Park PJ
Bioinformatics; 2013 Apr; 29(8):1089-91. PubMed ID: 23419376
[TBL] [Abstract][Full Text] [Related]
17. MGEScan: a Galaxy-based system for identifying retrotransposons in genomes.
Lee H; Lee M; Mohammed Ismail W; Rho M; Fox GC; Oh S; Tang H
Bioinformatics; 2016 Aug; 32(16):2502-4. PubMed ID: 27153595
[TBL] [Abstract][Full Text] [Related]
18. Analysing high-throughput sequencing data in Python with HTSeq 2.0.
Putri GH; Anders S; Pyl PT; Pimanda JE; Zanini F
Bioinformatics; 2022 May; 38(10):2943-2945. PubMed ID: 35561197
[TBL] [Abstract][Full Text] [Related]
19. Kronos: a workflow assembler for genome analytics and informatics.
Taghiyar MJ; Rosner J; Grewal D; Grande BM; Aniba R; Grewal J; Boutros PC; Morin RD; Bashashati A; Shah SP
Gigascience; 2017 Jul; 6(7):1-10. PubMed ID: 28655203
[TBL] [Abstract][Full Text] [Related]
20. Extending KNIME for next-generation sequencing data analysis.
Jagla B; Wiswedel B; Coppée JY
Bioinformatics; 2011 Oct; 27(20):2907-9. PubMed ID: 21873641
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
