These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

137 related articles for article (PubMed ID: 24983118)

  • 1. DNA conformational flexibility study using phosphate backbone neutralization model.
    Xiao S; Zhu H; Wang L; Liang H
    Soft Matter; 2014 Feb; 10(7):1045-55. PubMed ID: 24983118
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Effect of a neutralized phosphate backbone on the minor groove of B-DNA: molecular dynamics simulation studies.
    Hamelberg D; Williams LD; Wilson WD
    Nucleic Acids Res; 2002 Aug; 30(16):3615-23. PubMed ID: 12177304
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Effect of base composition on DNA bending by phosphate neutralization.
    Strauss-Soukup JK; Rodrigues PD; Maher LJ
    Biophys Chem; 1998 Jun; 72(3):297-306. PubMed ID: 9691271
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Influence of divalent magnesium ion on DNA: molecular dynamics simulation studies.
    Mukherjee S; Bhattacharyya D
    J Biomol Struct Dyn; 2013; 31(8):896-912. PubMed ID: 22963740
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Sequence-specific Mg2+-DNA interactions: a molecular dynamics simulation study.
    Li W; Nordenskiöld L; Mu Y
    J Phys Chem B; 2011 Dec; 115(49):14713-20. PubMed ID: 22035057
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The Contribution of Backbone Electrostatic Repulsion to DNA Mechanical Properties is Length-Scale-Dependent.
    Xiao S; Liang H; Wales DJ
    J Phys Chem Lett; 2019 Sep; 10(17):4829-4835. PubMed ID: 31380654
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Phosphate backbone neutralization increases duplex DNA flexibility: a model for protein binding.
    Okonogi TM; Alley SC; Harwood EA; Hopkins PB; Robinson BH
    Proc Natl Acad Sci U S A; 2002 Apr; 99(7):4156-60. PubMed ID: 11929991
    [TBL] [Abstract][Full Text] [Related]  

  • 8. DNA structure: what's in charge?
    McConnell KJ; Beveridge DL
    J Mol Biol; 2000 Dec; 304(5):803-20. PubMed ID: 11124028
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Atomic-resolution crystal structures of B-DNA reveal specific influences of divalent metal ions on conformation and packing.
    Minasov G; Tereshko V; Egli M
    J Mol Biol; 1999 Aug; 291(1):83-99. PubMed ID: 10438608
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The contribution of phosphate-phosphate repulsions to the free energy of DNA bending.
    Range K; Mayaan E; Maher LJ; York DM
    Nucleic Acids Res; 2005; 33(4):1257-68. PubMed ID: 15741179
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Differential Deformability of the DNA Minor Groove and Altered BI/BII Backbone Conformational Equilibrium by the Monovalent Ions Li(+), Na(+), K(+), and Rb(+) via Water-Mediated Hydrogen Bonding.
    Savelyev A; MacKerell AD
    J Chem Theory Comput; 2015 Sep; 11(9):4473-85. PubMed ID: 26575937
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Effect of temperature on the structure and hydration layer of TATA-box DNA: A molecular dynamics simulation study.
    Samanta S; Raghunathan D; Mukherjee S
    J Mol Graph Model; 2016 May; 66():9-19. PubMed ID: 27017424
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Effects of neutralization pattern and stereochemistry on DNA bending by methylphosphonate substitutions.
    Strauss-Soukup JK; Vaghefi MM; Hogrefe RI; Maher LJ
    Biochemistry; 1997 Jul; 36(29):8692-8. PubMed ID: 9220955
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Charge neutralization and DNA bending by the Escherichia coli catabolite activator protein.
    Hardwidge PR; Zimmerman JM; Maher LJ
    Nucleic Acids Res; 2002 May; 30(9):1879-85. PubMed ID: 11972323
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Molecular dynamics simulations of B '-DNA: sequence effects on A-tract-induced bending and flexibility.
    McConnell KJ; Beveridge DL
    J Mol Biol; 2001 Nov; 314(1):23-40. PubMed ID: 11724529
    [TBL] [Abstract][Full Text] [Related]  

  • 16. DNA bending by small, mobile multivalent cations.
    Rouzina I; Bloomfield VA
    Biophys J; 1998 Jun; 74(6):3152-64. PubMed ID: 9635768
    [TBL] [Abstract][Full Text] [Related]  

  • 17. DNA A-tracts bending: polarization effects on electrostatic interactions across their minor groove.
    Ababneh AM; Ababneh ZQ; Large CC
    J Theor Biol; 2008 Jun; 252(4):742-9. PubMed ID: 18396297
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Bending of DNA by asymmetric charge neutralization: all-atom energy simulations.
    Kosikov KM; Gorin AA; Lu XJ; Olson WK; Manning GS
    J Am Chem Soc; 2002 May; 124(17):4838-47. PubMed ID: 11971734
    [TBL] [Abstract][Full Text] [Related]  

  • 19. DNA and its counterions: a molecular dynamics study.
    Várnai P; Zakrzewska K
    Nucleic Acids Res; 2004; 32(14):4269-80. PubMed ID: 15304564
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MD and NMR analyses of choline and TMA binding to duplex DNA: on the origins of aberrant sequence-dependent stability by alkyl cations in aqueous and water-free solvents.
    Portella G; Germann MW; Hud NV; Orozco M
    J Am Chem Soc; 2014 Feb; 136(8):3075-86. PubMed ID: 24490755
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.