These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

136 related articles for article (PubMed ID: 24989862)

  • 1. Scaling up genome annotation using MAKER and work queue.
    Thrasher A; Musgrave Z; Kachmarck B; Thain D; Emrich S
    Int J Bioinform Res Appl; 2014; 10(4-5):447-60. PubMed ID: 24989862
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CloudDOE: a user-friendly tool for deploying Hadoop clouds and analyzing high-throughput sequencing data with MapReduce.
    Chung WC; Chen CC; Ho JM; Lin CY; Hsu WL; Wang YC; Lee DT; Lai F; Huang CW; Chang YJ
    PLoS One; 2014; 9(6):e98146. PubMed ID: 24897343
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses.
    Jourdren L; Bernard M; Dillies MA; Le Crom S
    Bioinformatics; 2012 Jun; 28(11):1542-3. PubMed ID: 22492314
    [TBL] [Abstract][Full Text] [Related]  

  • 4. pblat: a multithread blat algorithm speeding up aligning sequences to genomes.
    Wang M; Kong L
    BMC Bioinformatics; 2019 Jan; 20(1):28. PubMed ID: 30646844
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CLUSTOM-CLOUD: In-Memory Data Grid-Based Software for Clustering 16S rRNA Sequence Data in the Cloud Environment.
    Oh J; Choi CH; Park MK; Kim BK; Hwang K; Lee SH; Hong SG; Nasir A; Cho WS; Kim KM
    PLoS One; 2016; 11(3):e0151064. PubMed ID: 26954507
    [TBL] [Abstract][Full Text] [Related]  

  • 6. BAMSI: a multi-cloud service for scalable distributed filtering of massive genome data.
    Ausmees K; John A; Toor SZ; Hellander A; Nettelblad C
    BMC Bioinformatics; 2018 Jun; 19(1):240. PubMed ID: 29940842
    [TBL] [Abstract][Full Text] [Related]  

  • 7. G2LC: Resources Autoscaling for Real Time Bioinformatics Applications in IaaS.
    Hu R; Liu G; Jiang J; Wang L
    Comput Math Methods Med; 2015; 2015():549026. PubMed ID: 26504488
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Resources and costs for microbial sequence analysis evaluated using virtual machines and cloud computing.
    Angiuoli SV; White JR; Matalka M; White O; Fricke WF
    PLoS One; 2011; 6(10):e26624. PubMed ID: 22028928
    [TBL] [Abstract][Full Text] [Related]  

  • 9. EST analysis pipeline: use of distributed computing resources.
    González FJ; Vizcaíno JA
    Methods Mol Biol; 2011; 722():103-20. PubMed ID: 21590415
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Bacterial Genomic Data Analysis in the Next-Generation Sequencing Era.
    Orsini M; Cuccuru G; Uva P; Fotia G
    Methods Mol Biol; 2016; 1415():407-22. PubMed ID: 27115645
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MC-GenomeKey: a multicloud system for the detection and annotation of genomic variants.
    Elshazly H; Souilmi Y; Tonellato PJ; Wall DP; Abouelhoda M
    BMC Bioinformatics; 2017 Jan; 18(1):49. PubMed ID: 28107819
    [TBL] [Abstract][Full Text] [Related]  

  • 12. BioPig: a Hadoop-based analytic toolkit for large-scale sequence data.
    Nordberg H; Bhatia K; Wang K; Wang Z
    Bioinformatics; 2013 Dec; 29(23):3014-9. PubMed ID: 24021384
    [TBL] [Abstract][Full Text] [Related]  

  • 13. From Wet-Lab to Variations: Concordance and Speed of Bioinformatics Pipelines for Whole Genome and Whole Exome Sequencing.
    Laurie S; Fernandez-Callejo M; Marco-Sola S; Trotta JR; Camps J; Chacón A; Espinosa A; Gut M; Gut I; Heath S; Beltran S
    Hum Mutat; 2016 Dec; 37(12):1263-1271. PubMed ID: 27604516
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Evaluation of next-generation sequencing software in mapping and assembly.
    Bao S; Jiang R; Kwan W; Wang B; Ma X; Song YQ
    J Hum Genet; 2011 Jun; 56(6):406-14. PubMed ID: 21525877
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Counting Kmers for Biological Sequences at Large Scale.
    Ge J; Meng J; Guo N; Wei Y; Balaji P; Feng S
    Interdiscip Sci; 2020 Mar; 12(1):99-108. PubMed ID: 31734873
    [TBL] [Abstract][Full Text] [Related]  

  • 16. An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics.
    Taylor RC
    BMC Bioinformatics; 2010 Dec; 11 Suppl 12(Suppl 12):S1. PubMed ID: 21210976
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Scaling predictive modeling in drug development with cloud computing.
    Moghadam BT; Alvarsson J; Holm M; Eklund M; Carlsson L; Spjuth O
    J Chem Inf Model; 2015 Jan; 55(1):19-25. PubMed ID: 25493610
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ASA3P: An automatic and scalable pipeline for the assembly, annotation and higher-level analysis of closely related bacterial isolates.
    Schwengers O; Hoek A; Fritzenwanker M; Falgenhauer L; Hain T; Chakraborty T; Goesmann A
    PLoS Comput Biol; 2020 Mar; 16(3):e1007134. PubMed ID: 32134915
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Performance and scaling behavior of bioinformatic applications in virtualization environments to create awareness for the efficient use of compute resources.
    Hanussek M; Bartusch F; Krüger J
    PLoS Comput Biol; 2021 Jul; 17(7):e1009244. PubMed ID: 34283824
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism.
    Yu J; Blom J; Sczyrba A; Goesmann A
    J Biotechnol; 2017 Sep; 257():58-60. PubMed ID: 28232083
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.