These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

158 related articles for article (PubMed ID: 24990608)

  • 1. PyWATER: a PyMOL plug-in to find conserved water molecules in proteins by clustering.
    Patel H; Grüning BA; Günther S; Merfort I
    Bioinformatics; 2014 Oct; 30(20):2978-80. PubMed ID: 24990608
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PyKnot: a PyMOL tool for the discovery and analysis of knots in proteins.
    Lua RC
    Bioinformatics; 2012 Aug; 28(15):2069-71. PubMed ID: 22611132
    [TBL] [Abstract][Full Text] [Related]  

  • 3. InteractiveROSETTA: a graphical user interface for the PyRosetta protein modeling suite.
    Schenkelberg CD; Bystroff C
    Bioinformatics; 2015 Dec; 31(24):4023-5. PubMed ID: 26315900
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Compounds In Literature (CIL): screening for compounds and relatives in PubMed.
    Grüning BA; Senger C; Erxleben A; Flemming S; Günther S
    Bioinformatics; 2011 May; 27(9):1341-2. PubMed ID: 21414988
    [TBL] [Abstract][Full Text] [Related]  

  • 5. WATsite: hydration site prediction program with PyMOL interface.
    Hu B; Lill MA
    J Comput Chem; 2014 Jun; 35(16):1255-60. PubMed ID: 24752524
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Shortcuts for faster image creation in PyMOL.
    Mooers BHM
    Protein Sci; 2020 Jan; 29(1):268-276. PubMed ID: 31710740
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PyMod 2.0: improvements in protein sequence-structure analysis and homology modeling within PyMOL.
    Janson G; Zhang C; Prado MG; Paiardini A
    Bioinformatics; 2017 Feb; 33(3):444-446. PubMed ID: 28158668
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The new protein topology graph library web server.
    Schäfer T; Scheck A; Bruneß D; May P; Koch I
    Bioinformatics; 2016 Feb; 32(3):474-6. PubMed ID: 26446136
    [TBL] [Abstract][Full Text] [Related]  

  • 9. mol2sphere: spherical decomposition of multi-domain molecules for visualization and coarse grained spatial modeling.
    Masison J; Michalski PJ; Loew LM; Schuyler AD
    Bioinformatics; 2018 Nov; 34(22):3948-3950. PubMed ID: 29931043
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PROVAT: a tool for Voronoi tessellation analysis of protein structures and complexes.
    Gore SP; Burke DF; Blundell TL
    Bioinformatics; 2005 Aug; 21(15):3316-7. PubMed ID: 15932902
    [TBL] [Abstract][Full Text] [Related]  

  • 11. WATsite2.0 with PyMOL Plugin: Hydration Site Prediction and Visualization.
    Yang Y; Hu B; Lill MA
    Methods Mol Biol; 2017; 1611():123-134. PubMed ID: 28451976
    [TBL] [Abstract][Full Text] [Related]  

  • 12. ALFA: automatic ligand flexibility assignment.
    Klett J; Cortés-Cabrera Á; Gil-Redondo R; Gago F; Morreale A
    J Chem Inf Model; 2014 Jan; 54(1):314-23. PubMed ID: 24392957
    [TBL] [Abstract][Full Text] [Related]  

  • 13. VisualCNA: a GUI for interactive constraint network analysis and protein engineering for improving thermostability.
    Rathi PC; Mulnaes D; Gohlke H
    Bioinformatics; 2015 Jul; 31(14):2394-6. PubMed ID: 25770091
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Azahar: a PyMOL plugin for construction, visualization and analysis of glycan molecules.
    Arroyuelo A; Vila JA; Martin OA
    J Comput Aided Mol Des; 2016 Aug; 30(8):619-24. PubMed ID: 27549814
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank.
    Prlic A; Kalro T; Bhattacharya R; Christie C; Burley SK; Rose PW
    Bioinformatics; 2016 Dec; 32(24):3833-3835. PubMed ID: 27551105
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RING-PyMOL: residue interaction networks of structural ensembles and molecular dynamics.
    Del Conte A; Monzon AM; Clementel D; Camagni GF; Minervini G; Tosatto SCE; Piovesan D
    Bioinformatics; 2023 May; 39(5):. PubMed ID: 37079739
    [TBL] [Abstract][Full Text] [Related]  

  • 17. CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures.
    Kozlikova B; Sebestova E; Sustr V; Brezovsky J; Strnad O; Daniel L; Bednar D; Pavelka A; Manak M; Bezdeka M; Benes P; Kotry M; Gora A; Damborsky J; Sochor J
    Bioinformatics; 2014 Sep; 30(18):2684-5. PubMed ID: 24876375
    [TBL] [Abstract][Full Text] [Related]  

  • 18. CAPS: coevolution analysis using protein sequences.
    Fares MA; McNally D
    Bioinformatics; 2006 Nov; 22(22):2821-2. PubMed ID: 17005535
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MOSBY: a molecular structure viewer program with portability and extensibility.
    Ueno Y; Asai K
    J Mol Graph Model; 2002 Mar; 20(5):411-3. PubMed ID: 11885962
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Stochastic simulation GUI for biochemical networks.
    Vallabhajosyula RR; Sauro HM
    Bioinformatics; 2007 Jul; 23(14):1859-61. PubMed ID: 17586553
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.