These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

145 related articles for article (PubMed ID: 25053142)

  • 1. Suffix tree searcher: exploration of common substrings in large DNA sequence sets.
    Minkley D; Whitney MJ; Lin SH; Barsky MG; Kelly C; Upton C
    BMC Res Notes; 2014 Jul; 7():466. PubMed ID: 25053142
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genome comparison without alignment using shortest unique substrings.
    Haubold B; Pierstorff N; Möller F; Wiehe T
    BMC Bioinformatics; 2005 May; 6():123. PubMed ID: 15910684
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Fast online and index-based algorithms for approximate search of RNA sequence-structure patterns.
    Meyer F; Kurtz S; Beckstette M
    BMC Bioinformatics; 2013 Jul; 14():226. PubMed ID: 23865810
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Multiple Sequence Alignment Based on a Suffix Tree and Center-Star Strategy: A Linear Method for Multiple Nucleotide Sequence Alignment on Spark Parallel Framework.
    Su W; Liao X; Lu Y; Zou Q; Peng S
    J Comput Biol; 2017 Dec; 24(12):1230-1242. PubMed ID: 29116822
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The generalised k-Truncated Suffix Tree for time-and space-efficient searches in multiple DNA or protein sequences.
    Schulz MH; Bauer S; Robinson PN
    Int J Bioinform Res Appl; 2008; 4(1):81-95. PubMed ID: 18283030
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SaAlign: Multiple DNA/RNA sequence alignment and phylogenetic tree construction tool for ultra-large datasets and ultra-long sequences based on suffix array.
    Wang Z; Tan J; Long Y; Liu Y; Lei W; Cai J; Yang Y; Liu Z
    Comput Struct Biotechnol J; 2022; 20():1487-1493. PubMed ID: 35422971
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.
    Hanekamp K; Bohnebeck U; Beszteri B; Valentin K
    Bioinformatics; 2007 Apr; 23(7):793-801. PubMed ID: 17332025
    [TBL] [Abstract][Full Text] [Related]  

  • 8. GenomeMatcher: a graphical user interface for DNA sequence comparison.
    Ohtsubo Y; Ikeda-Ohtsubo W; Nagata Y; Tsuda M
    BMC Bioinformatics; 2008 Sep; 9():376. PubMed ID: 18793444
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Recent Hits Acquired by BLAST (ReHAB): a tool to identify new hits in sequence similarity searches.
    Whitney J; Esteban DJ; Upton C
    BMC Bioinformatics; 2005 Feb; 6():23. PubMed ID: 15701178
    [TBL] [Abstract][Full Text] [Related]  

  • 10. VCFtoTree: a user-friendly tool to construct locus-specific alignments and phylogenies from thousands of anthropologically relevant genome sequences.
    Xu D; Jaber Y; Pavlidis P; Gokcumen O
    BMC Bioinformatics; 2017 Sep; 18(1):426. PubMed ID: 28950836
    [TBL] [Abstract][Full Text] [Related]  

  • 11. FMAlign2: a novel fast multiple nucleotide sequence alignment method for ultralong datasets.
    Zhang P; Liu H; Wei Y; Zhai Y; Tian Q; Zou Q
    Bioinformatics; 2024 Jan; 40(1):. PubMed ID: 38200554
    [TBL] [Abstract][Full Text] [Related]  

  • 12. CLAGen: a tool for clustering and annotating gene sequences using a suffix tree algorithm.
    Han Si; Lee SG; Kim KH; Choi CJ; Kim YH; Hwang KS
    Biosystems; 2006 Jun; 84(3):175-82. PubMed ID: 16384634
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment.
    Kim T; Joo H
    BMC Bioinformatics; 2010 Sep; 11():467. PubMed ID: 20849574
    [TBL] [Abstract][Full Text] [Related]  

  • 14. mkESA: enhanced suffix array construction tool.
    Homann R; Fleer D; Giegerich R; Rehmsmeier M
    Bioinformatics; 2009 Apr; 25(8):1084-5. PubMed ID: 19246510
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SSAHA: a fast search method for large DNA databases.
    Ning Z; Cox AJ; Mullikin JC
    Genome Res; 2001 Oct; 11(10):1725-9. PubMed ID: 11591649
    [TBL] [Abstract][Full Text] [Related]  

  • 16. SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building.
    Gouy M; Guindon S; Gascuel O
    Mol Biol Evol; 2010 Feb; 27(2):221-4. PubMed ID: 19854763
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Seaview Version 5: A Multiplatform Software for Multiple Sequence Alignment, Molecular Phylogenetic Analyses, and Tree Reconciliation.
    Gouy M; Tannier E; Comte N; Parsons DP
    Methods Mol Biol; 2021; 2231():241-260. PubMed ID: 33289897
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Refined repetitive sequence searches utilizing a fast hash function and cross species information retrievals.
    Reneker J; Shyu CR
    BMC Bioinformatics; 2005 May; 6():111. PubMed ID: 15869708
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Compressed suffix tree--a basis for genome-scale sequence analysis.
    Välimäki N; Gerlach W; Dixit K; Mäkinen V
    Bioinformatics; 2007 Mar; 23(5):629-30. PubMed ID: 17237063
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Transcriptome walking: a laboratory-oriented GUI-based approach to mRNA identification from deep-sequenced data.
    French AS
    BMC Res Notes; 2012 Dec; 5():673. PubMed ID: 23217191
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.