253 related articles for article (PubMed ID: 25056310)
1. Functional gene groups are concentrated within chromosomes, among chromosomes and in the nuclear space of the human genome.
Thévenin A; Ein-Dor L; Ozery-Flato M; Shamir R
Nucleic Acids Res; 2014 Sep; 42(15):9854-61. PubMed ID: 25056310
[TBL] [Abstract][Full Text] [Related]
2. The spatial organization of human chromosomes within the nuclei of normal and emerin-mutant cells.
Boyle S; Gilchrist S; Bridger JM; Mahy NL; Ellis JA; Bickmore WA
Hum Mol Genet; 2001 Feb; 10(3):211-9. PubMed ID: 11159939
[TBL] [Abstract][Full Text] [Related]
3. A three-dimensional model of the yeast genome.
Duan Z; Andronescu M; Schutz K; McIlwain S; Kim YJ; Lee C; Shendure J; Fields S; Blau CA; Noble WS
Nature; 2010 May; 465(7296):363-7. PubMed ID: 20436457
[TBL] [Abstract][Full Text] [Related]
4. The corrected gene proximity map for analyzing the 3D genome organization using Hi-C data.
Ye C; Paccanaro A; Gerstein M; Yan KK
BMC Bioinformatics; 2020 May; 21(1):222. PubMed ID: 32471347
[TBL] [Abstract][Full Text] [Related]
5. Nuclear organization of the genome and the potential for gene regulation.
Fraser P; Bickmore W
Nature; 2007 May; 447(7143):413-7. PubMed ID: 17522674
[TBL] [Abstract][Full Text] [Related]
6. Structure of the human chromosome interaction network.
Sarnataro S; Chiariello AM; Esposito A; Prisco A; Nicodemi M
PLoS One; 2017; 12(11):e0188201. PubMed ID: 29141034
[TBL] [Abstract][Full Text] [Related]
7. SPIN reveals genome-wide landscape of nuclear compartmentalization.
Wang Y; Zhang Y; Zhang R; van Schaik T; Zhang L; Sasaki T; Peric-Hupkes D; Chen Y; Gilbert DM; van Steensel B; Belmont AS; Ma J
Genome Biol; 2021 Jan; 22(1):36. PubMed ID: 33446254
[TBL] [Abstract][Full Text] [Related]
8. A maximum likelihood algorithm for reconstructing 3D structures of human chromosomes from chromosomal contact data.
Oluwadare O; Zhang Y; Cheng J
BMC Genomics; 2018 Feb; 19(1):161. PubMed ID: 29471801
[TBL] [Abstract][Full Text] [Related]
9. Intra- and inter-chromosomal interactions correlate with CTCF binding genome wide.
Botta M; Haider S; Leung IX; Lio P; Mozziconacci J
Mol Syst Biol; 2010 Nov; 6():426. PubMed ID: 21045820
[TBL] [Abstract][Full Text] [Related]
10. Chromosome conformation maps in fission yeast reveal cell cycle dependent sub nuclear structure.
Grand RS; Pichugina T; Gehlen LR; Jones MB; Tsai P; Allison JR; Martienssen R; O'Sullivan JM
Nucleic Acids Res; 2014 Nov; 42(20):12585-99. PubMed ID: 25342201
[TBL] [Abstract][Full Text] [Related]
11. Integrative approaches in genome structure analysis.
Boninsegna L; Yildirim A; Zhan Y; Alber F
Structure; 2022 Jan; 30(1):24-36. PubMed ID: 34963059
[TBL] [Abstract][Full Text] [Related]
12. Blank spots on the map: some current questions on nuclear organization and genome architecture.
Adriaens C; Serebryannyy LA; Feric M; Schibler A; Meaburn KJ; Kubben N; Trzaskoma P; Shachar S; Vidak S; Finn EH; Sood V; Pegoraro G; Misteli T
Histochem Cell Biol; 2018 Dec; 150(6):579-592. PubMed ID: 30238154
[TBL] [Abstract][Full Text] [Related]
13. Chromosome territories, interchromatin domain compartment, and nuclear matrix: an integrated view of the functional nuclear architecture.
Cremer T; Kreth G; Koester H; Fink RH; Heintzmann R; Cremer M; Solovei I; Zink D; Cremer C
Crit Rev Eukaryot Gene Expr; 2000; 10(2):179-212. PubMed ID: 11186332
[TBL] [Abstract][Full Text] [Related]
14. Unravelling global genome organization by 3C-seq.
Tanizawa H; Noma K
Semin Cell Dev Biol; 2012 Apr; 23(2):213-21. PubMed ID: 22120510
[TBL] [Abstract][Full Text] [Related]
15. Data-Driven Polymer Model for Mechanistic Exploration of Diploid Genome Organization.
Qi Y; Reyes A; Johnstone SE; Aryee MJ; Bernstein BE; Zhang B
Biophys J; 2020 Nov; 119(9):1905-1916. PubMed ID: 33086041
[TBL] [Abstract][Full Text] [Related]
16. De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture.
Di Pierro M; Cheng RR; Lieberman Aiden E; Wolynes PG; Onuchic JN
Proc Natl Acad Sci U S A; 2017 Nov; 114(46):12126-12131. PubMed ID: 29087948
[TBL] [Abstract][Full Text] [Related]
17. Spatial features for Escherichia coli genome organization.
Xie T; Fu LY; Yang QY; Xiong H; Xu H; Ma BG; Zhang HY
BMC Genomics; 2015 Feb; 16(1):37. PubMed ID: 25652224
[TBL] [Abstract][Full Text] [Related]
18. Genes responsive to rapamycin and serum deprivation are clustered on chromosomes and undergo reorganization within local chromatin environments.
Belak ZR; Pickering JA; Gillespie ZE; Audette G; Eramian M; Mitchell JA; Bridger JM; Kusalik A; Eskiw CH
Biochem Cell Biol; 2020 Apr; 98(2):178-190. PubMed ID: 31479623
[TBL] [Abstract][Full Text] [Related]
19. MOGEN: a tool for reconstructing 3D models of genomes from chromosomal conformation capturing data.
Trieu T; Cheng J
Bioinformatics; 2016 May; 32(9):1286-92. PubMed ID: 26722115
[TBL] [Abstract][Full Text] [Related]
20. Patterns of segmental duplication in the human genome.
Zhang L; Lu HH; Chung WY; Yang J; Li WH
Mol Biol Evol; 2005 Jan; 22(1):135-41. PubMed ID: 15371527
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
