BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

160 related articles for article (PubMed ID: 25070459)

  • 1. Assessing the hodgepodge of non-mapped reads in bacterial transcriptomes: real or artifactual RNA chimeras?
    Lloréns-Rico V; Serrano L; Lluch-Senar M
    BMC Genomics; 2014 Jul; 15(1):633. PubMed ID: 25070459
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
    Johnson BK; Scholz MB; Teal TK; Abramovitch RB
    BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RNA-Seq for Bacterial Gene Expression.
    Poulsen LD; Vinther J
    Curr Protoc Nucleic Acid Chem; 2018 Jun; 73(1):e55. PubMed ID: 29927111
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A highly multiplexed and sensitive RNA-seq protocol for simultaneous analysis of host and pathogen transcriptomes.
    Avraham R; Haseley N; Fan A; Bloom-Ackermann Z; Livny J; Hung DT
    Nat Protoc; 2016 Aug; 11(8):1477-91. PubMed ID: 27442864
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Next generation sequencing of microbial transcriptomes: challenges and opportunities.
    van Vliet AH
    FEMS Microbiol Lett; 2010 Jan; 302(1):1-7. PubMed ID: 19735299
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Testing of library preparation methods for transcriptome sequencing of real life glioblastoma and brain tissue specimens: A comparative study with special focus on long non-coding RNAs.
    Vecera M; Sana J; Oppelt J; Tichy B; Alena K; Lipina R; Smrcka M; Jancalek R; Hermanova M; Kren L; Slaby O
    PLoS One; 2019; 14(2):e0211978. PubMed ID: 30742682
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A new computational method for detection of chimeric 16S rRNA artifacts generated by PCR amplification from mixed bacterial populations.
    Komatsoulis GA; Waterman MS
    Appl Environ Microbiol; 1997 Jun; 63(6):2338-46. PubMed ID: 9172353
    [TBL] [Abstract][Full Text] [Related]  

  • 8. RNA-Seq: a revolutionary tool for transcriptomics.
    Wang Z; Gerstein M; Snyder M
    Nat Rev Genet; 2009 Jan; 10(1):57-63. PubMed ID: 19015660
    [TBL] [Abstract][Full Text] [Related]  

  • 9. READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data.
    Förstner KU; Vogel J; Sharma CM
    Bioinformatics; 2014 Dec; 30(23):3421-3. PubMed ID: 25123900
    [TBL] [Abstract][Full Text] [Related]  

  • 10. RNA sequencing of transcriptomes in human brain regions: protein-coding and non-coding RNAs, isoforms and alleles.
    Webb A; Papp AC; Curtis A; Newman LC; Pietrzak M; Seweryn M; Handelman SK; Rempala GA; Wang D; Graziosa E; Tyndale RF; Lerman C; Kelsoe JR; Mash DC; Sadee W
    BMC Genomics; 2015 Nov; 16():990. PubMed ID: 26597164
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Improved bacterial RNA-seq by Cas9-based depletion of ribosomal RNA reads.
    Prezza G; Heckel T; Dietrich S; Homberger C; Westermann AJ; Vogel J
    RNA; 2020 Aug; 26(8):1069-1078. PubMed ID: 32345633
    [TBL] [Abstract][Full Text] [Related]  

  • 12. De novo assembly of bacterial transcriptomes from RNA-seq data.
    Tjaden B
    Genome Biol; 2015 Jan; 16(1):1. PubMed ID: 25583448
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Studying bacterial transcriptomes using RNA-seq.
    Croucher NJ; Thomson NR
    Curr Opin Microbiol; 2010 Oct; 13(5):619-24. PubMed ID: 20888288
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Bacterial RNA Biology on a Genome Scale.
    Hör J; Gorski SA; Vogel J
    Mol Cell; 2018 Jun; 70(5):785-799. PubMed ID: 29358079
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data.
    Alberti A; Belser C; Engelen S; Bertrand L; Orvain C; Brinas L; Cruaud C; Giraut L; Da Silva C; Firmo C; Aury JM; Wincker P
    BMC Genomics; 2014 Oct; 15(1):912. PubMed ID: 25331572
    [TBL] [Abstract][Full Text] [Related]  

  • 16. dupRadar: a Bioconductor package for the assessment of PCR artifacts in RNA-Seq data.
    Sayols S; Scherzinger D; Klein H
    BMC Bioinformatics; 2016 Oct; 17(1):428. PubMed ID: 27769170
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads.
    Martin J; Bruno VM; Fang Z; Meng X; Blow M; Zhang T; Sherlock G; Snyder M; Wang Z
    BMC Genomics; 2010 Nov; 11():663. PubMed ID: 21106091
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Molecular Profiling of RNA Tumors Using High-Throughput RNA Sequencing: From Raw Data to Systems Level Analyses.
    da Silveira WA; Hazard ES; Chung D; Hardiman G
    Methods Mol Biol; 2019; 1908():185-204. PubMed ID: 30649729
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Accurate identification and analysis of human mRNA isoforms using deep long read sequencing.
    Tilgner H; Raha D; Habegger L; Mohiuddin M; Gerstein M; Snyder M
    G3 (Bethesda); 2013 Mar; 3(3):387-97. PubMed ID: 23450794
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown.
    Pertea M; Kim D; Pertea GM; Leek JT; Salzberg SL
    Nat Protoc; 2016 Sep; 11(9):1650-67. PubMed ID: 27560171
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.