417 related articles for article (PubMed ID: 25070970)
1. The inference of gene trees with species trees.
Szöllősi GJ; Tannier E; Daubin V; Boussau B
Syst Biol; 2015 Jan; 64(1):e42-62. PubMed ID: 25070970
[TBL] [Abstract][Full Text] [Related]
2. Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer models.
Chauve C; Ponty Y; Wallner M
J Math Biol; 2020 Apr; 80(5):1353-1388. PubMed ID: 32060618
[TBL] [Abstract][Full Text] [Related]
3. Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design.
McCormack JE; Huang H; Knowles LL
Syst Biol; 2009 Oct; 58(5):501-8. PubMed ID: 20525604
[TBL] [Abstract][Full Text] [Related]
4. To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods.
Molloy EK; Warnow T
Syst Biol; 2018 Mar; 67(2):285-303. PubMed ID: 29029338
[TBL] [Abstract][Full Text] [Related]
5. Consistency and inconsistency of consensus methods for inferring species trees from gene trees in the presence of ancestral population structure.
DeGiorgio M; Rosenberg NA
Theor Popul Biol; 2016 Aug; 110():12-24. PubMed ID: 27086043
[TBL] [Abstract][Full Text] [Related]
6. Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions.
Liu L; Pearl DK
Syst Biol; 2007 Jun; 56(3):504-14. PubMed ID: 17562474
[TBL] [Abstract][Full Text] [Related]
7. Coalescent-Based Analyses of Genomic Sequence Data Provide a Robust Resolution of Phylogenetic Relationships among Major Groups of Gibbons.
Shi CM; Yang Z
Mol Biol Evol; 2018 Jan; 35(1):159-179. PubMed ID: 29087487
[TBL] [Abstract][Full Text] [Related]
8. Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers.
Carstens BC; Knowles LL
Syst Biol; 2007 Jun; 56(3):400-11. PubMed ID: 17520504
[TBL] [Abstract][Full Text] [Related]
9. Species Tree Estimation and the Impact of Gene Loss Following Whole-Genome Duplication.
Xiong H; Wang D; Shao C; Yang X; Yang J; Ma T; Davis CC; Liu L; Xi Z
Syst Biol; 2022 Oct; 71(6):1348-1361. PubMed ID: 35689633
[TBL] [Abstract][Full Text] [Related]
10. Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent.
Allman ES; Degnan JH; Rhodes JA
J Math Biol; 2011 Jun; 62(6):833-62. PubMed ID: 20652704
[TBL] [Abstract][Full Text] [Related]
11. A Bayesian Supertree Model for Genome-Wide Species Tree Reconstruction.
De Oliveira Martins L; Mallo D; Posada D
Syst Biol; 2016 May; 65(3):397-416. PubMed ID: 25281847
[TBL] [Abstract][Full Text] [Related]
12. Bayesian-Weighted Triplet and Quartet Methods for Species Tree Inference.
Richards A; Kubatko L
Bull Math Biol; 2021 Jul; 83(9):93. PubMed ID: 34297209
[TBL] [Abstract][Full Text] [Related]
13. Using Genomic Location and Coalescent Simulation to Investigate Gene Tree Discordance in Medicago L.
Sousa F; Bertrand YJK; Doyle JJ; Oxelman B; Pfeil BE
Syst Biol; 2017 Nov; 66(6):934-949. PubMed ID: 28177088
[TBL] [Abstract][Full Text] [Related]
14. Does Gene Tree Discordance Explain the Mismatch between Macroevolutionary Models and Empirical Patterns of Tree Shape and Branching Times?
Stadler T; Degnan JH; Rosenberg NA
Syst Biol; 2016 Jul; 65(4):628-39. PubMed ID: 26968785
[TBL] [Abstract][Full Text] [Related]
15. Estimating optimal species trees from incomplete gene trees under deep coalescence.
Bayzid MS; Warnow T
J Comput Biol; 2012 Jun; 19(6):591-605. PubMed ID: 22697236
[TBL] [Abstract][Full Text] [Related]
16. A matter of phylogenetic scale: Distinguishing incomplete lineage sorting from lateral gene transfer as the cause of gene tree discord in recent versus deep diversification histories.
Knowles LL; Huang H; Sukumaran J; Smith SA
Am J Bot; 2018 Mar; 105(3):376-384. PubMed ID: 29710372
[TBL] [Abstract][Full Text] [Related]
17. Signal, Uncertainty, and Conflict in Phylogenomic Data for a Diverse Lineage of Microbial Eukaryotes (Diatoms, Bacillariophyta).
Parks MB; Wickett NJ; Alverson AJ
Mol Biol Evol; 2018 Jan; 35(1):80-93. PubMed ID: 29040712
[TBL] [Abstract][Full Text] [Related]
18. GeneRax: A Tool for Species-Tree-Aware Maximum Likelihood-Based Gene Family Tree Inference under Gene Duplication, Transfer, and Loss.
Morel B; Kozlov AM; Stamatakis A; Szöllősi GJ
Mol Biol Evol; 2020 Sep; 37(9):2763-2774. PubMed ID: 32502238
[TBL] [Abstract][Full Text] [Related]
19. What is the danger of the anomaly zone for empirical phylogenetics?
Huang H; Knowles LL
Syst Biol; 2009 Oct; 58(5):527-36. PubMed ID: 20525606
[TBL] [Abstract][Full Text] [Related]
20. Modern Phylogenomics: Building Phylogenetic Trees Using the Multispecies Coalescent Model.
Liu L; Anderson C; Pearl D; Edwards SV
Methods Mol Biol; 2019; 1910():211-239. PubMed ID: 31278666
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]