These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

387 related articles for article (PubMed ID: 25072168)

  • 1. Estimating the composition of species in metagenomes by clustering of next-generation read sequences.
    Seok HS; Hong W; Kim J
    Methods; 2014 Oct; 69(3):213-9. PubMed ID: 25072168
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Metagenome assembly through clustering of next-generation sequencing data using protein sequences.
    Sim M; Kim J
    J Microbiol Methods; 2015 Feb; 109():180-7. PubMed ID: 25572018
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MetaCAA: A clustering-aided methodology for efficient assembly of metagenomic datasets.
    Reddy RM; Mohammed MH; Mande SS
    Genomics; 2014; 103(2-3):161-8. PubMed ID: 24607570
    [TBL] [Abstract][Full Text] [Related]  

  • 4. OGRE: Overlap Graph-based metagenomic Read clustEring.
    Balvert M; Luo X; Hauptfeld E; Schönhuth A; Dutilh BE
    Bioinformatics; 2021 May; 37(7):905-912. PubMed ID: 32871010
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Metagenomic signatures of 86 microbial and viral metagenomes.
    Willner D; Thurber RV; Rohwer F
    Environ Microbiol; 2009 Jul; 11(7):1752-66. PubMed ID: 19302541
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Generation and application of pseudo-long reads for metagenome assembly.
    Sim M; Lee J; Wy S; Park N; Lee D; Kwon D; Kim J
    Gigascience; 2022 May; 11():. PubMed ID: 35579554
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Taxonomic binning of metagenome samples generated by next-generation sequencing technologies.
    Dröge J; McHardy AC
    Brief Bioinform; 2012 Nov; 13(6):646-55. PubMed ID: 22851513
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Large-scale metagenomic sequence clustering on map-reduce clusters.
    Yang X; Zola J; Aluru S
    J Bioinform Comput Biol; 2013 Feb; 11(1):1340001. PubMed ID: 23427983
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Analysis and comparison of very large metagenomes with fast clustering and functional annotation.
    Li W
    BMC Bioinformatics; 2009 Oct; 10():359. PubMed ID: 19863816
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis.
    Dubinkina VB; Ischenko DS; Ulyantsev VI; Tyakht AV; Alexeev DG
    BMC Bioinformatics; 2016 Jan; 17():38. PubMed ID: 26774270
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes.
    Lin HH; Liao YC
    Sci Rep; 2016 Apr; 6():24175. PubMed ID: 27067514
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Intrinsic correlation of oligonucleotides: a novel genomic signature for metagenome analysis.
    Ding X; Cao CC; Sun X
    J Theor Biol; 2014 Jul; 353():9-18. PubMed ID: 24631045
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Comparison of metagenomic samples using sequence signatures.
    Jiang B; Song K; Ren J; Deng M; Sun F; Zhang X
    BMC Genomics; 2012 Dec; 13():730. PubMed ID: 23268604
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences.
    Wang Z; Wang Y; Fuhrman JA; Sun F; Zhu S
    Brief Bioinform; 2020 May; 21(3):777-790. PubMed ID: 30860572
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Genovo: de novo assembly for metagenomes.
    Laserson J; Jojic V; Koller D
    J Comput Biol; 2011 Mar; 18(3):429-43. PubMed ID: 21385045
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MetaObtainer: A Tool for Obtaining Specified Species from Metagenomic Reads of Next-generation Sequencing.
    Pan W; Chen B; Xu Y
    Interdiscip Sci; 2015 Dec; 7(4):405-13. PubMed ID: 26293485
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Grid-Assembly: An oligonucleotide composition-based partitioning strategy to aid metagenomic sequence assembly.
    Ghosh TS; Mehra V; Mande SS
    J Bioinform Comput Biol; 2015 Jun; 13(3):1541004. PubMed ID: 25790784
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Longitudinal Metagenomic Analysis of Hospital Air Identifies Clinically Relevant Microbes.
    King P; Pham LK; Waltz S; Sphar D; Yamamoto RT; Conrad D; Taplitz R; Torriani F; Forsyth RA
    PLoS One; 2016; 11(8):e0160124. PubMed ID: 27482891
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A New Unsupervised Binning Approach for Metagenomic Sequences Based on N-grams and Automatic Feature Weighting.
    Liao R; Zhang R; Guan J; Zhou S
    IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(1):42-54. PubMed ID: 26355506
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.
    Olson ND; Treangen TJ; Hill CM; Cepeda-Espinoza V; Ghurye J; Koren S; Pop M
    Brief Bioinform; 2019 Jul; 20(4):1140-1150. PubMed ID: 28968737
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 20.