These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

226 related articles for article (PubMed ID: 25075116)

  • 1. Trowel: a fast and accurate error correction module for Illumina sequencing reads.
    Lim EC; Müller J; Hagmann J; Henz SR; Kim ST; Weigel D
    Bioinformatics; 2014 Nov; 30(22):3264-5. PubMed ID: 25075116
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A comparative study of k-spectrum-based error correction methods for next-generation sequencing data analysis.
    Akogwu I; Wang N; Zhang C; Gong P
    Hum Genomics; 2016 Jul; 10 Suppl 2(Suppl 2):20. PubMed ID: 27461106
    [TBL] [Abstract][Full Text] [Related]  

  • 3. QuorUM: An Error Corrector for Illumina Reads.
    Marçais G; Yorke JA; Zimin A
    PLoS One; 2015; 10(6):e0130821. PubMed ID: 26083032
    [TBL] [Abstract][Full Text] [Related]  

  • 4. CARE: context-aware sequencing read error correction.
    Kallenborn F; Hildebrandt A; Schmidt B
    Bioinformatics; 2021 May; 37(7):889-895. PubMed ID: 32818262
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A hybrid and scalable error correction algorithm for indel and substitution errors of long reads.
    Das AK; Goswami S; Lee K; Park SJ
    BMC Genomics; 2019 Dec; 20(Suppl 11):948. PubMed ID: 31856721
    [TBL] [Abstract][Full Text] [Related]  

  • 6. BFC: correcting Illumina sequencing errors.
    Li H
    Bioinformatics; 2015 Sep; 31(17):2885-7. PubMed ID: 25953801
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs.
    Limasset A; Flot JF; Peterlongo P
    Bioinformatics; 2020 Mar; 36(5):1374-1381. PubMed ID: 30785192
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Error filtering, pair assembly and error correction for next-generation sequencing reads.
    Edgar RC; Flyvbjerg H
    Bioinformatics; 2015 Nov; 31(21):3476-82. PubMed ID: 26139637
    [TBL] [Abstract][Full Text] [Related]  

  • 9. KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies.
    Mapleson D; Garcia Accinelli G; Kettleborough G; Wright J; Clavijo BJ
    Bioinformatics; 2017 Feb; 33(4):574-576. PubMed ID: 27797770
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ACE: accurate correction of errors using K-mer tries.
    Sheikhizadeh S; de Ridder D
    Bioinformatics; 2015 Oct; 31(19):3216-8. PubMed ID: 26026137
    [TBL] [Abstract][Full Text] [Related]  

  • 11. EC: an efficient error correction algorithm for short reads.
    Saha S; Rajasekaran S
    BMC Bioinformatics; 2015; 16 Suppl 17(Suppl 17):S2. PubMed ID: 26678663
    [TBL] [Abstract][Full Text] [Related]  

  • 12. CARE 2.0: reducing false-positive sequencing error corrections using machine learning.
    Kallenborn F; Cascitti J; Schmidt B
    BMC Bioinformatics; 2022 Jun; 23(1):227. PubMed ID: 35698033
    [TBL] [Abstract][Full Text] [Related]  

  • 13. HISEA: HIerarchical SEed Aligner for PacBio data.
    Khiste N; Ilie L
    BMC Bioinformatics; 2017 Dec; 18(1):564. PubMed ID: 29258419
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Blue: correcting sequencing errors using consensus and context.
    Greenfield P; Duesing K; Papanicolaou A; Bauer DC
    Bioinformatics; 2014 Oct; 30(19):2723-32. PubMed ID: 24919879
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Squeakr: an exact and approximate k-mer counting system.
    Pandey P; Bender MA; Johnson R; Patro R; Berger B
    Bioinformatics; 2018 Feb; 34(4):568-575. PubMed ID: 29444235
    [TBL] [Abstract][Full Text] [Related]  

  • 16. NextPolish: a fast and efficient genome polishing tool for long-read assembly.
    Hu J; Fan J; Sun Z; Liu S
    Bioinformatics; 2020 Apr; 36(7):2253-2255. PubMed ID: 31778144
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Iterative error correction of long sequencing reads maximizes accuracy and improves contig assembly.
    Sameith K; Roscito JG; Hiller M
    Brief Bioinform; 2017 Jan; 18(1):1-8. PubMed ID: 26868358
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Lerna: transformer architectures for configuring error correction tools for short- and long-read genome sequencing.
    Sharma A; Jain P; Mahgoub A; Zhou Z; Mahadik K; Chaterji S
    BMC Bioinformatics; 2022 Jan; 23(1):25. PubMed ID: 34991450
    [TBL] [Abstract][Full Text] [Related]  

  • 19. HiLive: real-time mapping of illumina reads while sequencing.
    Lindner MS; Strauch B; Schulze JM; Tausch SH; Dabrowski PW; Nitsche A; Renard BY
    Bioinformatics; 2017 Mar; 33(6):917-319. PubMed ID: 27794555
    [TBL] [Abstract][Full Text] [Related]  

  • 20. GMcloser: closing gaps in assemblies accurately with a likelihood-based selection of contig or long-read alignments.
    Kosugi S; Hirakawa H; Tabata S
    Bioinformatics; 2015 Dec; 31(23):3733-41. PubMed ID: 26261222
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.