BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

182 related articles for article (PubMed ID: 25080993)

  • 1. Exploring representations of protein structure for automated remote homology detection and mapping of protein structure space.
    Molloy K; Van MJ; Barbara D; Shehu A
    BMC Bioinformatics; 2014; 15 Suppl 8(Suppl 8):S4. PubMed ID: 25080993
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Multi-view methods for protein structure comparison using latent dirichlet allocation.
    Shivashankar S; Srivathsan S; Ravindran B; Tendulkar AV
    Bioinformatics; 2011 Jul; 27(13):i61-8. PubMed ID: 21685102
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Application of latent semantic analysis to protein remote homology detection.
    Dong QW; Wang XL; Lin L
    Bioinformatics; 2006 Feb; 22(3):285-90. PubMed ID: 16317074
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Automatic classification of protein structures using low-dimensional structure space mappings.
    Asarnow D; Singh R
    BMC Bioinformatics; 2014; 15 Suppl 2(Suppl 2):S1. PubMed ID: 24564500
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote homolog detection.
    Jung I; Lee J; Lee SY; Kim D
    BMC Bioinformatics; 2008 Jul; 9():298. PubMed ID: 18590572
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Iterative sequence/secondary structure search for protein homologs: comparison with amino acid sequence alignments and application to fold recognition in genome databases.
    Wallqvist A; Fukunishi Y; Murphy LR; Fadel A; Levy RM
    Bioinformatics; 2000 Nov; 16(11):988-1002. PubMed ID: 11159310
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Large-scale prediction of human protein-protein interactions from amino acid sequence based on latent topic features.
    Pan XY; Zhang YN; Shen HB
    J Proteome Res; 2010 Oct; 9(10):4992-5001. PubMed ID: 20698572
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ProFAT: a web-based tool for the functional annotation of protein sequences.
    Bradshaw CR; Surendranath V; Habermann B
    BMC Bioinformatics; 2006 Oct; 7():466. PubMed ID: 17059594
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis.
    Liu B; Wang X; Lin L; Dong Q; Wang X
    BMC Bioinformatics; 2008 Dec; 9():510. PubMed ID: 19046430
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Physicochemical property distributions for accurate and rapid pairwise protein homology detection.
    Webb-Robertson BJ; Ratuiste KG; Oehmen CS
    BMC Bioinformatics; 2010 Mar; 11():145. PubMed ID: 20302613
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Graph Theory-Based Sequence Descriptors as Remote Homology Predictors.
    Agüero-Chapin G; Galpert D; Molina-Ruiz R; Ancede-Gallardo E; Pérez-Machado G; de la Riva GA; Antunes A
    Biomolecules; 2019 Dec; 10(1):. PubMed ID: 31878100
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Integrating subcellular location for improving machine learning models of remote homology detection in eukaryotic organisms.
    Shah AR; Oehmen CS; Harper J; Webb-Robertson BJ
    Comput Biol Chem; 2007 Apr; 31(2):138-42. PubMed ID: 17416337
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Fast model-based protein homology detection without alignment.
    Hochreiter S; Heusel M; Obermayer K
    Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Beyond the Twilight Zone: automated prediction of structural properties of proteins by recursive neural networks and remote homology information.
    Mooney C; Pollastri G
    Proteins; 2009 Oct; 77(1):181-90. PubMed ID: 19422056
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Word correlation matrices for protein sequence analysis and remote homology detection.
    Lingner T; Meinicke P
    BMC Bioinformatics; 2008 Jun; 9():259. PubMed ID: 18522726
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Filling-in void and sparse regions in protein sequence space by protein-like artificial sequences enables remarkable enhancement in remote homology detection capability.
    Mudgal R; Sowdhamini R; Chandra N; Srinivasan N; Sandhya S
    J Mol Biol; 2014 Feb; 426(4):962-79. PubMed ID: 24316367
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Folic acid supplementation and malaria susceptibility and severity among people taking antifolate antimalarial drugs in endemic areas.
    Crider K; Williams J; Qi YP; Gutman J; Yeung L; Mai C; Finkelstain J; Mehta S; Pons-Duran C; Menéndez C; Moraleda C; Rogers L; Daniels K; Green P
    Cochrane Database Syst Rev; 2022 Feb; 2(2022):. PubMed ID: 36321557
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Computational methods for remote homolog identification.
    Wan XF; Xu D
    Curr Protein Pept Sci; 2005 Dec; 6(6):527-46. PubMed ID: 16381602
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Reconstruction of ancestral protein sequences and its applications.
    Cai W; Pei J; Grishin NV
    BMC Evol Biol; 2004 Sep; 4():33. PubMed ID: 15377393
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A Multimodal Approach for Protein Remote Homology Detection.
    Lovato P; Giorgetti A; Bicego M
    IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(5):1193-8. PubMed ID: 26451830
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.