BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

357 related articles for article (PubMed ID: 25093819)

  • 1. Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains.
    Kyrpides NC; Hugenholtz P; Eisen JA; Woyke T; Göker M; Parker CT; Amann R; Beck BJ; Chain PS; Chun J; Colwell RR; Danchin A; Dawyndt P; Dedeurwaerdere T; DeLong EF; Detter JC; De Vos P; Donohue TJ; Dong XZ; Ehrlich DS; Fraser C; Gibbs R; Gilbert J; Gilna P; Glöckner FO; Jansson JK; Keasling JD; Knight R; Labeda D; Lapidus A; Lee JS; Li WJ; Ma J; Markowitz V; Moore ER; Morrison M; Meyer F; Nelson KE; Ohkuma M; Ouzounis CA; Pace N; Parkhill J; Qin N; Rossello-Mora R; Sikorski J; Smith D; Sogin M; Stevens R; Stingl U; Suzuki K; Taylor D; Tiedje JM; Tindall B; Wagner M; Weinstock G; Weissenbach J; White O; Wang J; Zhang L; Zhou YG; Field D; Whitman WB; Garrity GM; Klenk HP
    PLoS Biol; 2014 Aug; 12(8):e1001920. PubMed ID: 25093819
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.
    Wu D; Hugenholtz P; Mavromatis K; Pukall R; Dalin E; Ivanova NN; Kunin V; Goodwin L; Wu M; Tindall BJ; Hooper SD; Pati A; Lykidis A; Spring S; Anderson IJ; D'haeseleer P; Zemla A; Singer M; Lapidus A; Nolan M; Copeland A; Han C; Chen F; Cheng JF; Lucas S; Kerfeld C; Lang E; Gronow S; Chain P; Bruce D; Rubin EM; Kyrpides NC; Klenk HP; Eisen JA
    Nature; 2009 Dec; 462(7276):1056-60. PubMed ID: 20033048
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Adding genomic 'foliage' to the tree of life.
    Walker A
    Nat Rev Microbiol; 2014 Feb; 12(2):78. PubMed ID: 24429416
    [No Abstract]   [Full Text] [Related]  

  • 4. Past and future species definitions for Bacteria and Archaea.
    Rosselló-Móra R; Amann R
    Syst Appl Microbiol; 2015 Jun; 38(4):209-16. PubMed ID: 25747618
    [TBL] [Abstract][Full Text] [Related]  

  • 5. TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy.
    Meier-Kolthoff JP; Göker M
    Nat Commun; 2019 May; 10(1):2182. PubMed ID: 31097708
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Towards a systematic understanding of differences between archaeal and bacterial diversity.
    Spang A; Offre P
    Environ Microbiol Rep; 2019 Feb; 11(1):9-12. PubMed ID: 30394664
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Insights into the phylogeny and coding potential of microbial dark matter.
    Rinke C; Schwientek P; Sczyrba A; Ivanova NN; Anderson IJ; Cheng JF; Darling A; Malfatti S; Swan BK; Gies EA; Dodsworth JA; Hedlund BP; Tsiamis G; Sievert SM; Liu WT; Eisen JA; Hallam SJ; Kyrpides NC; Stepanauskas R; Rubin EM; Hugenholtz P; Woyke T
    Nature; 2013 Jul; 499(7459):431-7. PubMed ID: 23851394
    [TBL] [Abstract][Full Text] [Related]  

  • 8. En route to a genome-based classification of Archaea and Bacteria?
    Klenk HP; Göker M
    Syst Appl Microbiol; 2010 Jun; 33(4):175-82. PubMed ID: 20409658
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A complete domain-to-species taxonomy for Bacteria and Archaea.
    Parks DH; Chuvochina M; Chaumeil PA; Rinke C; Mussig AJ; Hugenholtz P
    Nat Biotechnol; 2020 Sep; 38(9):1079-1086. PubMed ID: 32341564
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Illuminating microbial diversity.
    Forster SC
    Nat Rev Microbiol; 2017 Oct; 15(10):578. PubMed ID: 28852214
    [No Abstract]   [Full Text] [Related]  

  • 11. Flexible genomic islands as drivers of genome evolution.
    Rodriguez-Valera F; Martin-Cuadrado AB; López-Pérez M
    Curr Opin Microbiol; 2016 Jun; 31():154-160. PubMed ID: 27085300
    [TBL] [Abstract][Full Text] [Related]  

  • 12. AnnoTree: visualization and exploration of a functionally annotated microbial tree of life.
    Mendler K; Chen H; Parks DH; Lobb B; Hug LA; Doxey AC
    Nucleic Acids Res; 2019 May; 47(9):4442-4448. PubMed ID: 31081040
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Microbial taxonomy in the era of OMICS: application of DNA sequences, computational tools and techniques.
    Mahato NK; Gupta V; Singh P; Kumari R; Verma H; Tripathi C; Rani P; Sharma A; Singhvi N; Sood U; Hira P; Kohli P; Nayyar N; Puri A; Bajaj A; Kumar R; Negi V; Talwar C; Khurana H; Nagar S; Sharma M; Mishra H; Singh AK; Dhingra G; Negi RK; Shakarad M; Singh Y; Lal R
    Antonie Van Leeuwenhoek; 2017 Oct; 110(10):1357-1371. PubMed ID: 28831610
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes.
    Dos Santos PC; Fang Z; Mason SW; Setubal JC; Dixon R
    BMC Genomics; 2012 May; 13():162. PubMed ID: 22554235
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Metagenomics: genomic analysis of microbial communities.
    Riesenfeld CS; Schloss PD; Handelsman J
    Annu Rev Genet; 2004; 38():525-52. PubMed ID: 15568985
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Status of genome projects for nonpathogenic bacteria and archaea.
    Nelson KE; Paulsen IT; Heidelberg JF; Fraser CM
    Nat Biotechnol; 2000 Oct; 18(10):1049-54. PubMed ID: 11017041
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Microbial Ecology and Evolution in the Acid Mine Drainage Model System.
    Huang LN; Kuang JL; Shu WS
    Trends Microbiol; 2016 Jul; 24(7):581-593. PubMed ID: 27050827
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Marker genes that are less conserved in their sequences are useful for predicting genome-wide similarity levels between closely related prokaryotic strains.
    Lan Y; Rosen G; Hershberg R
    Microbiome; 2016 May; 4(1):18. PubMed ID: 27138046
    [TBL] [Abstract][Full Text] [Related]  

  • 19. GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy.
    Parks DH; Chuvochina M; Rinke C; Mussig AJ; Chaumeil PA; Hugenholtz P
    Nucleic Acids Res; 2022 Jan; 50(D1):D785-D794. PubMed ID: 34520557
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Genomic exploration of the diversity, ecology, and evolution of the archaeal domain of life.
    Spang A; Caceres EF; Ettema TJG
    Science; 2017 Aug; 357(6351):. PubMed ID: 28798101
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 18.