BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

567 related articles for article (PubMed ID: 25118648)

  • 1. PDB explorer -- a web based algorithm for protein annotation viewer and 3D visualization.
    Nayarisseri A; Shardiwal RK; Yadav M; Kanungo N; Singh P; Shah P; Ahmed S
    Interdiscip Sci; 2014 Dec; 6(4):279-84. PubMed ID: 25118648
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PDBms-An online tool for PDB file splitting and interactive molecular visualization.
    Ashok Kumar T
    Interdiscip Sci; 2023 Mar; 15(1):146-153. PubMed ID: 36180812
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PDB-Explorer: a web-based interactive map of the protein data bank in shape space.
    Jin X; Awale M; Zasso M; Kostro D; Patiny L; Reymond JL
    BMC Bioinformatics; 2015 Oct; 16():339. PubMed ID: 26493835
    [TBL] [Abstract][Full Text] [Related]  

  • 4. PDB Goodies--a web-based GUI to manipulate the Protein Data Bank file.
    Hussain AS; Shanthi V; Sheik SS; Jeyakanthan J; Selvarani P; Sekar K
    Acta Crystallogr D Biol Crystallogr; 2002 Aug; 58(Pt 8):1385-6. PubMed ID: 12136164
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Patch Finder Plus (PFplus): a web server for extracting and displaying positive electrostatic patches on protein surfaces.
    Shazman S; Celniker G; Haber O; Glaser F; Mandel-Gutfreund Y
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W526-30. PubMed ID: 17537808
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MolTalk--a programming library for protein structures and structure analysis.
    Diemand AV; Scheib H
    BMC Bioinformatics; 2004 Apr; 5():39. PubMed ID: 15096277
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PDB Editor: a user-friendly Java-based Protein Data Bank file editor with a GUI.
    Lee J; Kim SH
    Acta Crystallogr D Biol Crystallogr; 2009 Apr; 65(Pt 4):399-402. PubMed ID: 19307724
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Columba: an integrated database of proteins, structures, and annotations.
    Trissl S; Rother K; Müller H; Steinke T; Koch I; Preissner R; Frömmel C; Leser U
    BMC Bioinformatics; 2005 Mar; 6():81. PubMed ID: 15801979
    [TBL] [Abstract][Full Text] [Related]  

  • 9. FeatureMap3D--a tool to map protein features and sequence conservation onto homologous structures in the PDB.
    Wernersson R; Rapacki K; Staerfeldt HH; Sackett PW; Mølgaard A
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W84-8. PubMed ID: 16845115
    [TBL] [Abstract][Full Text] [Related]  

  • 10. STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins.
    Heinig M; Frishman D
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W500-2. PubMed ID: 15215436
    [TBL] [Abstract][Full Text] [Related]  

  • 11. pKNOT: the protein KNOT web server.
    Lai YL; Yen SC; Yu SH; Hwang JK
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W420-4. PubMed ID: 17526524
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PDB-tools web: A user-friendly interface for the manipulation of PDB files.
    Jiménez-García B; Teixeira JMC; Trellet M; Rodrigues JPGLM; Bonvin AMJJ
    Proteins; 2021 Mar; 89(3):330-335. PubMed ID: 33111403
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Voro3D: 3D Voronoi tessellations applied to protein structures.
    Dupuis F; Sadoc JF; Jullien R; Angelov B; Mornon JP
    Bioinformatics; 2005 Apr; 21(8):1715-6. PubMed ID: 15217822
    [TBL] [Abstract][Full Text] [Related]  

  • 14. eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape.
    Kinoshita K; Murakami Y; Nakamura H
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W398-402. PubMed ID: 17567616
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Protein Repair and Analysis Server: A Web Server to Repair PDB Structures, Add Missing Heavy Atoms and Hydrogen Atoms, and Assign Secondary Structures by Amide Interactions.
    Nnyigide OS; Nnyigide TO; Lee SG; Hyun K
    J Chem Inf Model; 2022 Sep; 62(17):4232-4246. PubMed ID: 36000562
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The PDB-Preview database: a repository of in-silico models of 'on-hold' PDB entries.
    Fischer D; Paś J; Rychlewski L
    Bioinformatics; 2004 Oct; 20(15):2482-4. PubMed ID: 15073011
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PDBsum: Structural summaries of PDB entries.
    Laskowski RA; Jabłońska J; Pravda L; Vařeková RS; Thornton JM
    Protein Sci; 2018 Jan; 27(1):129-134. PubMed ID: 28875543
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PepBuild: a web server for building structure data of peptides/proteins.
    Singh B
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W559-61. PubMed ID: 15215449
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PSST-2.0: Protein Data Bank Sequence Search Tool.
    Ananthalakshmi P; Samayamohan K; Chokalingam C; Mayilarasi C; Sekar K
    Appl Bioinformatics; 2005; 4(2):141-5. PubMed ID: 16128616
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SuperLigands - a database of ligand structures derived from the Protein Data Bank.
    Michalsky E; Dunkel M; Goede A; Preissner R
    BMC Bioinformatics; 2005 May; 6():122. PubMed ID: 15943884
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 29.