174 related articles for article (PubMed ID: 25123651)
1. Computational and statistical study on the molecular interaction between antigen and antibody.
Osajima T; Suzuki M; Neya S; Hoshino T
J Mol Graph Model; 2014 Sep; 53():128-139. PubMed ID: 25123651
[TBL] [Abstract][Full Text] [Related]
2. Roles of the respective loops at complementarity determining region on the antigen-antibody recognition.
Osajima T; Hoshino T
Comput Biol Chem; 2016 Oct; 64():368-383. PubMed ID: 27591792
[TBL] [Abstract][Full Text] [Related]
3. A computational approach for studying antibody-antigen interactions without prior structural information: the anti-testosterone binding antibody as a case study.
Koivuniemi A; Takkinen K; Nevanen T
Proteins; 2017 Feb; 85(2):322-331. PubMed ID: 27936519
[TBL] [Abstract][Full Text] [Related]
4. Analysis of Binding Modes of Antigen-Antibody Complexes by Molecular Mechanics Calculation.
Qu L; Qiao X; Qi F; Nishida N; Hoshino T
J Chem Inf Model; 2021 May; 61(5):2396-2406. PubMed ID: 33934602
[TBL] [Abstract][Full Text] [Related]
5. Restricted diversity of antigen binding residues of antibodies revealed by computational alanine scanning of 227 antibody-antigen complexes.
Robin G; Sato Y; Desplancq D; Rochel N; Weiss E; Martineau P
J Mol Biol; 2014 Nov; 426(22):3729-3743. PubMed ID: 25174334
[TBL] [Abstract][Full Text] [Related]
6. Structure, function and properties of antibody binding sites.
Mian IS; Bradwell AR; Olson AJ
J Mol Biol; 1991 Jan; 217(1):133-51. PubMed ID: 1988675
[TBL] [Abstract][Full Text] [Related]
7. Molecular Characterization of Two Monoclonal Antibodies against the Same Epitope on B-Cell Receptor Associated Protein 31.
Kim WT; Shin S; Hwang HJ; Kim MK; Jung HS; Park H; Ryu CJ
PLoS One; 2016; 11(12):e0167527. PubMed ID: 27907150
[TBL] [Abstract][Full Text] [Related]
8. Free energy simulations and MM-PBSA analyses on the affinity and specificity of steroid binding to antiestradiol antibody.
Laitinen T; Kankare JA; Peräkylä M
Proteins; 2004 Apr; 55(1):34-43. PubMed ID: 14997538
[TBL] [Abstract][Full Text] [Related]
9. Structural features of the reactions between antibodies and protein antigens.
Braden BC; Poljak RJ
FASEB J; 1995 Jan; 9(1):9-16. PubMed ID: 7821765
[TBL] [Abstract][Full Text] [Related]
10. Molecular basis of flexible peptide recognition by an antibody.
Makabe K
J Biochem; 2020 Apr; 167(4):343-345. PubMed ID: 32027351
[TBL] [Abstract][Full Text] [Related]
11. Structural consensus among antibodies defines the antigen binding site.
Kunik V; Peters B; Ofran Y
PLoS Comput Biol; 2012; 8(2):e1002388. PubMed ID: 22383868
[TBL] [Abstract][Full Text] [Related]
12. Selection and analysis of an optimized anti-VEGF antibody: crystal structure of an affinity-matured Fab in complex with antigen.
Chen Y; Wiesmann C; Fuh G; Li B; Christinger HW; McKay P; de Vos AM; Lowman HB
J Mol Biol; 1999 Nov; 293(4):865-81. PubMed ID: 10543973
[TBL] [Abstract][Full Text] [Related]
13. Binding of CDR-derived peptides is mechanistically different from that of high-affinity parental antibodies.
Timmerman P; Shochat SG; Desmet J; Barderas R; Casal JI; Meloen RH; Altschuh D
J Mol Recognit; 2010; 23(6):559-68. PubMed ID: 21038356
[TBL] [Abstract][Full Text] [Related]
14. Computational Tools for Aiding Rational Antibody Design.
Krawczyk K; Dunbar J; Deane CM
Methods Mol Biol; 2017; 1529():399-416. PubMed ID: 27914064
[TBL] [Abstract][Full Text] [Related]
15. Characterizing the Diversity of the CDR-H3 Loop Conformational Ensembles in Relationship to Antibody Binding Properties.
Fernández-Quintero ML; Loeffler JR; Kraml J; Kahler U; Kamenik AS; Liedl KR
Front Immunol; 2018; 9():3065. PubMed ID: 30666252
[TBL] [Abstract][Full Text] [Related]
16. Investigating allostery in molecular recognition: insights from a computational study of multiple antibody-antigen complexes.
Corrada D; Morra G; Colombo G
J Phys Chem B; 2013 Jan; 117(2):535-52. PubMed ID: 23240736
[TBL] [Abstract][Full Text] [Related]
17. Understanding differences between synthetic and natural antibodies can help improve antibody engineering.
Burkovitz A; Ofran Y
MAbs; 2016; 8(2):278-87. PubMed ID: 26652053
[TBL] [Abstract][Full Text] [Related]
18. A comparative study of trypsin specificity based on QM/MM molecular dynamics simulation and QM/MM GBSA calculation.
Chen J; Wang J; Zhang Q; Chen K; Zhu W
J Biomol Struct Dyn; 2015; 33(12):2606-18. PubMed ID: 25562613
[TBL] [Abstract][Full Text] [Related]
19. Analysis of the antigen combining site: correlations between length and sequence composition of the hypervariable loops and the nature of the antigen.
Collis AV; Brouwer AP; Martin AC
J Mol Biol; 2003 Jan; 325(2):337-54. PubMed ID: 12488099
[TBL] [Abstract][Full Text] [Related]
20. Ice-binding mechanism of winter flounder antifreeze proteins.
Cheng A; Merz KM
Biophys J; 1997 Dec; 73(6):2851-73. PubMed ID: 9414201
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
