BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

107 related articles for article (PubMed ID: 25137130)

  • 1. Identification of phosphopeptides with unknown cleavage specificity by a de novo sequencing assisted database search strategy.
    Dong M; Ye M; Cheng K; Dong J; Zhu J; Qin H; Bian Y; Zou H
    Proteomics; 2014 Nov; 14(21-22):2410-6. PubMed ID: 25137130
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Improve the coverage for the analysis of phosphoproteome of HeLa cells by a tandem digestion approach.
    Bian Y; Ye M; Song C; Cheng K; Wang C; Wei X; Zhu J; Chen R; Wang F; Zou H
    J Proteome Res; 2012 May; 11(5):2828-37. PubMed ID: 22468782
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Automatic validation of phosphopeptide identifications by the MS2/MS3 target-decoy search strategy.
    Jiang X; Han G; Feng S; Jiang X; Ye M; Yao X; Zou H
    J Proteome Res; 2008 Apr; 7(4):1640-9. PubMed ID: 18314942
    [TBL] [Abstract][Full Text] [Related]  

  • 4. De novo sequencing methods in proteomics.
    Hughes C; Ma B; Lajoie GA
    Methods Mol Biol; 2010; 604():105-21. PubMed ID: 20013367
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Improvement of phosphoproteome analyses using FAIMS and decision tree fragmentation. application to the insulin signaling pathway in Drosophila melanogaster S2 cells.
    Bridon G; Bonneil E; Muratore-Schroeder T; Caron-Lizotte O; Thibault P
    J Proteome Res; 2012 Feb; 11(2):927-40. PubMed ID: 22059388
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Correction of errors in tandem mass spectrum extraction enhances phosphopeptide identification.
    Hao P; Ren Y; Tam JP; Sze SK
    J Proteome Res; 2013 Dec; 12(12):5548-57. PubMed ID: 24147958
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PhoPepMass: A database and search tool assisting human phosphorylation peptide identification from mass spectrometry data.
    Zhang M; Cui H; Chen L; Yu Y; Glocker MO; Xie L
    J Genet Genomics; 2018 Jul; 45(7):381-388. PubMed ID: 30055873
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Citrate boosts the performance of phosphopeptide analysis by UPLC-ESI-MS/MS.
    Winter D; Seidler J; Ziv Y; Shiloh Y; Lehmann WD
    J Proteome Res; 2009 Jan; 8(1):418-24. PubMed ID: 19053530
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Automated phosphopeptide identification using multiple MS/MS fragmentation modes.
    Vandenbogaert M; Hourdel V; Jardin-Mathé O; Bigeard J; Bonhomme L; Legros V; Hirt H; Schwikowski B; Pflieger D
    J Proteome Res; 2012 Dec; 11(12):5695-703. PubMed ID: 23094866
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Algorithms for the de novo sequencing of peptides from tandem mass spectra.
    Allmer J
    Expert Rev Proteomics; 2011 Oct; 8(5):645-57. PubMed ID: 21999834
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Effect of high-accuracy precursor masses on phosphopeptide identification from MS3 spectra.
    Timm W; Ozlu N; Steen JJ; Steen H
    Anal Chem; 2010 May; 82(10):3977-80. PubMed ID: 20426395
    [TBL] [Abstract][Full Text] [Related]  

  • 12. An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells.
    Bodenmiller B; Mueller LN; Pedrioli PG; Pflieger D; Jünger MA; Eng JK; Aebersold R; Tao WA
    Mol Biosyst; 2007 Apr; 3(4):275-86. PubMed ID: 17372656
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Complementary Fe(3+)- and Ti(4+)-immobilized metal ion affinity chromatography for purification of acidic and basic phosphopeptides.
    Lai AC; Tsai CF; Hsu CC; Sun YN; Chen YJ
    Rapid Commun Mass Spectrom; 2012 Sep; 26(18):2186-94. PubMed ID: 22886815
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Variable Digestion Strategies for Phosphoproteomics Analysis.
    Gonczarowska-Jorge H; Dell'Aica M; Dickhut C; Zahedi RP
    Methods Mol Biol; 2016; 1355():225-39. PubMed ID: 26584929
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Confident site localization using a simulated phosphopeptide spectral library.
    Suni V; Imanishi SY; Maiolica A; Aebersold R; Corthals GL
    J Proteome Res; 2015 May; 14(5):2348-59. PubMed ID: 25774671
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Niobium(V) oxide (Nb2O5): application to phosphoproteomics.
    Ficarro SB; Parikh JR; Blank NC; Marto JA
    Anal Chem; 2008 Jun; 80(12):4606-13. PubMed ID: 18491922
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Simultaneous quantification of protein phosphorylation sites using liquid chromatography-tandem mass spectrometry-based targeted proteomics: a linear algebra approach for isobaric phosphopeptides.
    Xu F; Yang T; Sheng Y; Zhong T; Yang M; Chen Y
    J Proteome Res; 2014 Dec; 13(12):5452-60. PubMed ID: 25403019
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Sequential Fe3O4/TiO2 enrichment for phosphopeptide analysis by liquid chromatography/tandem mass spectrometry.
    Choi S; Kim J; Cho K; Park G; Yoon JH; Park S; Yoo JS; Ryu SH; Kim YH; Kim J
    Rapid Commun Mass Spectrom; 2010 May; 24(10):1467-74. PubMed ID: 20411586
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Highly robust, automated, and sensitive online TiO2-based phosphoproteomics applied to study endogenous phosphorylation in Drosophila melanogaster.
    Pinkse MW; Mohammed S; Gouw JW; van Breukelen B; Vos HR; Heck AJ
    J Proteome Res; 2008 Feb; 7(2):687-97. PubMed ID: 18034456
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing.
    Waridel P; Frank A; Thomas H; Surendranath V; Sunyaev S; Pevzner P; Shevchenko A
    Proteomics; 2007 Jul; 7(14):2318-29. PubMed ID: 17623296
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.