346 related articles for article (PubMed ID: 25142801)
1. Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes.
Miyamoto M; Motooka D; Gotoh K; Imai T; Yoshitake K; Goto N; Iida T; Yasunaga T; Horii T; Arakawa K; Kasahara M; Nakamura S
BMC Genomics; 2014 Aug; 15(1):699. PubMed ID: 25142801
[TBL] [Abstract][Full Text] [Related]
2. PacBio But Not Illumina Technology Can Achieve Fast, Accurate and Complete Closure of the High GC, Complex
Teng JLL; Yeung ML; Chan E; Jia L; Lin CH; Huang Y; Tse H; Wong SSY; Sham PC; Lau SKP; Woo PCY
Front Microbiol; 2017; 8():1448. PubMed ID: 28824579
[TBL] [Abstract][Full Text] [Related]
3. Efficient and accurate whole genome assembly and methylome profiling of E. coli.
Powers JG; Weigman VJ; Shu J; Pufky JM; Cox D; Hurban P
BMC Genomics; 2013 Oct; 14(1):675. PubMed ID: 24090403
[TBL] [Abstract][Full Text] [Related]
4. An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome.
Ferrarini M; Moretto M; Ward JA; Šurbanovski N; Stevanović V; Giongo L; Viola R; Cavalieri D; Velasco R; Cestaro A; Sargent DJ
BMC Genomics; 2013 Oct; 14():670. PubMed ID: 24083400
[TBL] [Abstract][Full Text] [Related]
5. A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers.
Quail MA; Smith M; Coupland P; Otto TD; Harris SR; Connor TR; Bertoni A; Swerdlow HP; Gu Y
BMC Genomics; 2012 Jul; 13():341. PubMed ID: 22827831
[TBL] [Abstract][Full Text] [Related]
6. Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome.
Quinn NL; Levenkova N; Chow W; Bouffard P; Boroevich KA; Knight JR; Jarvie TP; Lubieniecki KP; Desany BA; Koop BF; Harkins TT; Davidson WS
BMC Genomics; 2008 Aug; 9():404. PubMed ID: 18755037
[TBL] [Abstract][Full Text] [Related]
7. GABenchToB: a genome assembly benchmark tuned on bacteria and benchtop sequencers.
Jünemann S; Prior K; Albersmeier A; Albaum S; Kalinowski J; Goesmann A; Stoye J; Harmsen D
PLoS One; 2014; 9(9):e107014. PubMed ID: 25198770
[TBL] [Abstract][Full Text] [Related]
8. Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information.
Kim HS; Jeon S; Kim C; Kim YK; Cho YS; Kim J; Blazyte A; Manica A; Lee S; Bhak J
Gigascience; 2019 Dec; 8(12):. PubMed ID: 31794015
[TBL] [Abstract][Full Text] [Related]
9. SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing.
Dohm JC; Lottaz C; Borodina T; Himmelbauer H
Genome Res; 2007 Nov; 17(11):1697-706. PubMed ID: 17908823
[TBL] [Abstract][Full Text] [Related]
10. HGA: de novo genome assembly method for bacterial genomes using high coverage short sequencing reads.
Al-Okaily AA
BMC Genomics; 2016 Mar; 17():193. PubMed ID: 26945881
[TBL] [Abstract][Full Text] [Related]
11. De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms.
Giordano F; Aigrain L; Quail MA; Coupland P; Bonfield JK; Davies RM; Tischler G; Jackson DK; Keane TM; Li J; Yue JX; Liti G; Durbin R; Ning Z
Sci Rep; 2017 Jun; 7(1):3935. PubMed ID: 28638050
[TBL] [Abstract][Full Text] [Related]
12. Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore.
Lang D; Zhang S; Ren P; Liang F; Sun Z; Meng G; Tan Y; Li X; Lai Q; Han L; Wang D; Hu F; Wang W; Liu S
Gigascience; 2020 Dec; 9(12):. PubMed ID: 33319909
[TBL] [Abstract][Full Text] [Related]
13. The Streptomyces leeuwenhoekii genome: de novo sequencing and assembly in single contigs of the chromosome, circular plasmid pSLE1 and linear plasmid pSLE2.
Gomez-Escribano JP; Castro JF; Razmilic V; Chandra G; Andrews B; Asenjo JA; Bibb MJ
BMC Genomics; 2015 Jun; 16(1):485. PubMed ID: 26122045
[TBL] [Abstract][Full Text] [Related]
14. Evaluation and Validation of Assembling Corrected PacBio Long Reads for Microbial Genome Completion via Hybrid Approaches.
Lin HH; Liao YC
PLoS One; 2015; 10(12):e0144305. PubMed ID: 26641475
[TBL] [Abstract][Full Text] [Related]
15. Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing.
Goldstein S; Beka L; Graf J; Klassen JL
BMC Genomics; 2019 Jan; 20(1):23. PubMed ID: 30626323
[TBL] [Abstract][Full Text] [Related]
16. Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance.
Feldmeyer B; Wheat CW; Krezdorn N; Rotter B; Pfenninger M
BMC Genomics; 2011 Jun; 12():317. PubMed ID: 21679424
[TBL] [Abstract][Full Text] [Related]
17. Analysis of the genetic diversity of influenza A viruses using next-generation DNA sequencing.
Van den Hoecke S; Verhelst J; Vuylsteke M; Saelens X
BMC Genomics; 2015 Feb; 16(1):79. PubMed ID: 25758772
[TBL] [Abstract][Full Text] [Related]
18. Fragmentation and Coverage Variation in Viral Metagenome Assemblies, and Their Effect in Diversity Calculations.
García-López R; Vázquez-Castellanos JF; Moya A
Front Bioeng Biotechnol; 2015; 3():141. PubMed ID: 26442255
[TBL] [Abstract][Full Text] [Related]
19. SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information.
Boetzer M; Pirovano W
BMC Bioinformatics; 2014 Jun; 15():211. PubMed ID: 24950923
[TBL] [Abstract][Full Text] [Related]
20. Single-Molecule Real-Time Sequencing Combined with Optical Mapping Yields Completely Finished Fungal Genome.
Faino L; Seidl MF; Datema E; van den Berg GC; Janssen A; Wittenberg AH; Thomma BP
mBio; 2015 Aug; 6(4):. PubMed ID: 26286689
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
