These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

257 related articles for article (PubMed ID: 25148512)

  • 1. Comparative analysis of functional metagenomic annotation and the mappability of short reads.
    Carr R; Borenstein E
    PLoS One; 2014; 9(8):e105776. PubMed ID: 25148512
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MetaCluster-TA: taxonomic annotation for metagenomic data based on assembly-assisted binning.
    Wang Y; Leung H; Yiu S; Chin F
    BMC Genomics; 2014; 15 Suppl 1(Suppl 1):S12. PubMed ID: 24564377
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MGS-Fast: Metagenomic shotgun data fast annotation using microbial gene catalogs.
    Brown SM; Chen H; Hao Y; Laungani BP; Ali TA; Dong C; Lijeron C; Kim B; Wultsch C; Pei Z; Krampis K
    Gigascience; 2019 Apr; 8(4):. PubMed ID: 30942867
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Exploiting topic modeling to boost metagenomic reads binning.
    Zhang R; Cheng Z; Guan J; Zhou S
    BMC Bioinformatics; 2015; 16 Suppl 5(Suppl 5):S2. PubMed ID: 25859745
    [TBL] [Abstract][Full Text] [Related]  

  • 5. MetaEuk-sensitive, high-throughput gene discovery, and annotation for large-scale eukaryotic metagenomics.
    Levy Karin E; Mirdita M; Söding J
    Microbiome; 2020 Apr; 8(1):48. PubMed ID: 32245390
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Identification and Resolution of Microdiversity through Metagenomic Sequencing of Parallel Consortia.
    Nelson WC; Maezato Y; Wu YW; Romine MF; Lindemann SR
    Appl Environ Microbiol; 2016 Jan; 82(1):255-67. PubMed ID: 26497460
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Pooled assembly of marine metagenomic datasets: enriching annotation through chimerism.
    Magasin JD; Gerloff DL
    Bioinformatics; 2015 Feb; 31(3):311-7. PubMed ID: 25306399
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Combining gene prediction methods to improve metagenomic gene annotation.
    Yok NG; Rosen GL
    BMC Bioinformatics; 2011 Jan; 12():20. PubMed ID: 21232129
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Functional association prediction by community profiling.
    Jiao D; Han W; Ye Y
    Methods; 2017 Oct; 129():8-17. PubMed ID: 28454776
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps.
    Dilthey AT; Jain C; Koren S; Phillippy AM
    Nat Commun; 2019 Jul; 10(1):3066. PubMed ID: 31296857
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut.
    Vázquez-Castellanos JF; García-López R; Pérez-Brocal V; Pignatelli M; Moya A
    BMC Genomics; 2014 Jan; 15():37. PubMed ID: 24438450
    [TBL] [Abstract][Full Text] [Related]  

  • 12. MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function.
    Keegan KP; Glass EM; Meyer F
    Methods Mol Biol; 2016; 1399():207-33. PubMed ID: 26791506
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Beyond classification: gene-family phylogenies from shotgun metagenomic reads enable accurate community analysis.
    Riesenfeld SJ; Pollard KS
    BMC Genomics; 2013 Jun; 14():419. PubMed ID: 23799973
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences.
    Wang Z; Wang Y; Fuhrman JA; Sun F; Zhu S
    Brief Bioinform; 2020 May; 21(3):777-790. PubMed ID: 30860572
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A comprehensive investigation of metagenome assembly by linked-read sequencing.
    Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC
    Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Re-purposing software for functional characterization of the microbiome.
    Gardiner LJ; Haiminen N; Utro F; Parida L; Seabolt E; Krishna R; Kaufman JH
    Microbiome; 2021 Jan; 9(1):4. PubMed ID: 33422152
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Artificial functional difference between microbial communities caused by length difference of sequencing reads.
    Zhang Q; Doak TG; Ye Y
    Pac Symp Biocomput; 2012; ():259-70. PubMed ID: 22174281
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Joining Illumina paired-end reads for classifying phylogenetic marker sequences.
    Liu T; Chen CY; Chen-Deng A; Chen YL; Wang JY; Hou YI; Lin MC
    BMC Bioinformatics; 2020 Mar; 21(1):105. PubMed ID: 32171248
    [TBL] [Abstract][Full Text] [Related]  

  • 19. GHOSTX: A Fast Sequence Homology Search Tool for Functional Annotation of Metagenomic Data.
    Suzuki S; Ishida T; Ohue M; Kakuta M; Akiyama Y
    Methods Mol Biol; 2017; 1611():15-25. PubMed ID: 28451968
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A de Bruijn graph approach to the quantification of closely-related genomes in a microbial community.
    Wang M; Ye Y; Tang H
    J Comput Biol; 2012 Jun; 19(6):814-25. PubMed ID: 22697249
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.