259 related articles for article (PubMed ID: 25152014)
1. Meta-stochastic simulation of biochemical models for systems and synthetic biology.
Sanassy D; Widera P; Krasnogor N
ACS Synth Biol; 2015 Jan; 4(1):39-47. PubMed ID: 25152014
[TBL] [Abstract][Full Text] [Related]
2. Stochastic simulation GUI for biochemical networks.
Vallabhajosyula RR; Sauro HM
Bioinformatics; 2007 Jul; 23(14):1859-61. PubMed ID: 17586553
[TBL] [Abstract][Full Text] [Related]
3. The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior.
McCollum JM; Peterson GD; Cox CD; Simpson ML; Samatova NF
Comput Biol Chem; 2006 Feb; 30(1):39-49. PubMed ID: 16321569
[TBL] [Abstract][Full Text] [Related]
4. MONALISA for stochastic simulations of Petri net models of biochemical systems.
Balazki P; Lindauer K; Einloft J; Ackermann J; Koch I
BMC Bioinformatics; 2015 Jul; 16():215. PubMed ID: 26156221
[TBL] [Abstract][Full Text] [Related]
5. Stochastic P systems and the simulation of biochemical processes with dynamic compartments.
Spicher A; Michel O; Cieslak M; Giavitto JL; Prusinkiewicz P
Biosystems; 2008 Mar; 91(3):458-72. PubMed ID: 17728055
[TBL] [Abstract][Full Text] [Related]
6. Accuracy Analysis of Hybrid Stochastic Simulation Algorithm on Linear Chain Reaction Systems.
Chen M; Wang S; Cao Y
Bull Math Biol; 2019 Aug; 81(8):3024-3052. PubMed ID: 29992454
[TBL] [Abstract][Full Text] [Related]
7. STOCHSIMGPU: parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB.
Klingbeil G; Erban R; Giles M; Maini PK
Bioinformatics; 2011 Apr; 27(8):1170-1. PubMed ID: 21357575
[TBL] [Abstract][Full Text] [Related]
8. BioSimulator.jl: Stochastic simulation in Julia.
Landeros A; Stutz T; Keys KL; Alekseyenko A; Sinsheimer JS; Lange K; Sehl ME
Comput Methods Programs Biomed; 2018 Dec; 167():23-35. PubMed ID: 30501857
[TBL] [Abstract][Full Text] [Related]
9. The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology.
Blakes J; Twycross J; Romero-Campero FJ; Krasnogor N
Bioinformatics; 2011 Dec; 27(23):3323-4. PubMed ID: 21994219
[TBL] [Abstract][Full Text] [Related]
10. Modelling and analysis of the sugar cataract development process using stochastic hybrid systems.
Riley D; Koutsoukos X; Riley K
IET Syst Biol; 2009 May; 3(3):137-54. PubMed ID: 19449975
[TBL] [Abstract][Full Text] [Related]
11. Slow update stochastic simulation algorithms for modeling complex biochemical networks.
Ghosh D; De RK
Biosystems; 2017 Dec; 162():135-146. PubMed ID: 29080799
[TBL] [Abstract][Full Text] [Related]
12. Adaptive tree-based search for stochastic simulation algorithm.
Thanh VH; Zunino R
Int J Comput Biol Drug Des; 2014; 7(4):341-57. PubMed ID: 25539846
[TBL] [Abstract][Full Text] [Related]
13. pSSAlib: The partial-propensity stochastic chemical network simulator.
Ostrenko O; Incardona P; Ramaswamy R; Brusch L; Sbalzarini IF
PLoS Comput Biol; 2017 Dec; 13(12):e1005865. PubMed ID: 29206229
[TBL] [Abstract][Full Text] [Related]
14. CellMC--a multiplatform model compiler for the Cell Broadband Engine and x86.
Caulfield E; Hellander A
Bioinformatics; 2010 Feb; 26(3):426-8. PubMed ID: 19996166
[TBL] [Abstract][Full Text] [Related]
15. MesoRD 1.0: Stochastic reaction-diffusion simulations in the microscopic limit.
Fange D; Mahmutovic A; Elf J
Bioinformatics; 2012 Dec; 28(23):3155-7. PubMed ID: 23044538
[TBL] [Abstract][Full Text] [Related]
16. SYCAMORE--a systems biology computational analysis and modeling research environment.
Weidemann A; Richter S; Stein M; Sahle S; Gauges R; Gabdoulline R; Surovtsova I; Semmelrock N; Besson B; Rojas I; Wade R; Kummer U
Bioinformatics; 2008 Jun; 24(12):1463-4. PubMed ID: 18463116
[TBL] [Abstract][Full Text] [Related]
17. Discrete-time stochastic modeling and simulation of biochemical networks.
Sandmann W
Comput Biol Chem; 2008 Aug; 32(4):292-7. PubMed ID: 18499525
[TBL] [Abstract][Full Text] [Related]
18. Digital 'faces' of synthetic biology.
Friedrich K
Stud Hist Philos Biol Biomed Sci; 2013 Jun; 44(2):217-24. PubMed ID: 23578486
[TBL] [Abstract][Full Text] [Related]
19. Abstract Next Subvolume Method: a logical process-based approach for spatial stochastic simulation of chemical reactions.
Wang B; Hou B; Xing F; Yao Y
Comput Biol Chem; 2011 Jun; 35(3):193-8. PubMed ID: 21704266
[TBL] [Abstract][Full Text] [Related]
20. Parallel stochastic systems biology in the cloud.
Aldinucci M; Torquati M; Spampinato C; Drocco M; Misale C; Calcagno C; Coppo M
Brief Bioinform; 2014 Sep; 15(5):798-813. PubMed ID: 23780997
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
