BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

350 related articles for article (PubMed ID: 25164757)

  • 1. Comparative analysis of regulatory information and circuits across distant species.
    Boyle AP; Araya CL; Brdlik C; Cayting P; Cheng C; Cheng Y; Gardner K; Hillier LW; Janette J; Jiang L; Kasper D; Kawli T; Kheradpour P; Kundaje A; Li JJ; Ma L; Niu W; Rehm EJ; Rozowsky J; Slattery M; Spokony R; Terrell R; Vafeados D; Wang D; Weisdepp P; Wu YC; Xie D; Yan KK; Feingold EA; Good PJ; Pazin MJ; Huang H; Bickel PJ; Brenner SE; Reinke V; Waterston RH; Gerstein M; White KP; Kellis M; Snyder M
    Nature; 2014 Aug; 512(7515):453-6. PubMed ID: 25164757
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Correspondence of D. melanogaster and C. elegans developmental stages revealed by alternative splicing characteristics of conserved exons.
    Gao R; Li JJ
    BMC Genomics; 2017 Mar; 18(1):234. PubMed ID: 28302059
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks.
    Marbach D; Roy S; Ay F; Meyer PE; Candeias R; Kahveci T; Bristow CA; Kellis M
    Genome Res; 2012 Jul; 22(7):1334-49. PubMed ID: 22456606
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Genomics: Hiding in plain sight.
    Muerdter F; Stark A
    Nature; 2014 Aug; 512(7515):374-5. PubMed ID: 25164742
    [No Abstract]   [Full Text] [Related]  

  • 5. Comparative analysis of the transcriptome across distant species.
    Gerstein MB; Rozowsky J; Yan KK; Wang D; Cheng C; Brown JB; Davis CA; Hillier L; Sisu C; Li JJ; Pei B; Harmanci AO; Duff MO; Djebali S; Alexander RP; Alver BH; Auerbach R; Bell K; Bickel PJ; Boeck ME; Boley NP; Booth BW; Cherbas L; Cherbas P; Di C; Dobin A; Drenkow J; Ewing B; Fang G; Fastuca M; Feingold EA; Frankish A; Gao G; Good PJ; Guigó R; Hammonds A; Harrow J; Hoskins RA; Howald C; Hu L; Huang H; Hubbard TJ; Huynh C; Jha S; Kasper D; Kato M; Kaufman TC; Kitchen RR; Ladewig E; Lagarde J; Lai E; Leng J; Lu Z; MacCoss M; May G; McWhirter R; Merrihew G; Miller DM; Mortazavi A; Murad R; Oliver B; Olson S; Park PJ; Pazin MJ; Perrimon N; Pervouchine D; Reinke V; Reymond A; Robinson G; Samsonova A; Saunders GI; Schlesinger F; Sethi A; Slack FJ; Spencer WC; Stoiber MH; Strasbourger P; Tanzer A; Thompson OA; Wan KH; Wang G; Wang H; Watkins KL; Wen J; Wen K; Xue C; Yang L; Yip K; Zaleski C; Zhang Y; Zheng H; Brenner SE; Graveley BR; Celniker SE; Gingeras TR; Waterston R
    Nature; 2014 Aug; 512(7515):445-8. PubMed ID: 25164755
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Comparative analysis of function and interaction of transcription factors in nematodes: extensive conservation of orthology coupled to rapid sequence evolution.
    Haerty W; Artieri C; Khezri N; Singh RS; Gupta BP
    BMC Genomics; 2008 Aug; 9():399. PubMed ID: 18752680
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Comparison of D. melanogaster and C. elegans developmental stages, tissues, and cells by modENCODE RNA-seq data.
    Li JJ; Huang H; Bickel PJ; Brenner SE
    Genome Res; 2014 Jul; 24(7):1086-101. PubMed ID: 24985912
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Integrative analysis of C. elegans modENCODE ChIP-seq data sets to infer gene regulatory interactions.
    Van Nostrand EL; Kim SK
    Genome Res; 2013 Jun; 23(6):941-53. PubMed ID: 23531767
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Regulatory analysis of the C. elegans genome with spatiotemporal resolution.
    Araya CL; Kawli T; Kundaje A; Jiang L; Wu B; Vafeados D; Terrell R; Weissdepp P; Gevirtzman L; Mace D; Niu W; Boyle AP; Xie D; Ma L; Murray JI; Reinke V; Waterston RH; Snyder M
    Nature; 2014 Aug; 512(7515):400-5. PubMed ID: 25164749
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A map of the cis-regulatory sequences in the mouse genome.
    Shen Y; Yue F; McCleary DF; Ye Z; Edsall L; Kuan S; Wagner U; Dixon J; Lee L; Lobanenkov VV; Ren B
    Nature; 2012 Aug; 488(7409):116-20. PubMed ID: 22763441
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.
    Gerstein MB; Lu ZJ; Van Nostrand EL; Cheng C; Arshinoff BI; Liu T; Yip KY; Robilotto R; Rechtsteiner A; Ikegami K; Alves P; Chateigner A; Perry M; Morris M; Auerbach RK; Feng X; Leng J; Vielle A; Niu W; Rhrissorrakrai K; Agarwal A; Alexander RP; Barber G; Brdlik CM; Brennan J; Brouillet JJ; Carr A; Cheung MS; Clawson H; Contrino S; Dannenberg LO; Dernburg AF; Desai A; Dick L; Dosé AC; Du J; Egelhofer T; Ercan S; Euskirchen G; Ewing B; Feingold EA; Gassmann R; Good PJ; Green P; Gullier F; Gutwein M; Guyer MS; Habegger L; Han T; Henikoff JG; Henz SR; Hinrichs A; Holster H; Hyman T; Iniguez AL; Janette J; Jensen M; Kato M; Kent WJ; Kephart E; Khivansara V; Khurana E; Kim JK; Kolasinska-Zwierz P; Lai EC; Latorre I; Leahey A; Lewis S; Lloyd P; Lochovsky L; Lowdon RF; Lubling Y; Lyne R; MacCoss M; Mackowiak SD; Mangone M; McKay S; Mecenas D; Merrihew G; Miller DM; Muroyama A; Murray JI; Ooi SL; Pham H; Phippen T; Preston EA; Rajewsky N; Rätsch G; Rosenbaum H; Rozowsky J; Rutherford K; Ruzanov P; Sarov M; Sasidharan R; Sboner A; Scheid P; Segal E; Shin H; Shou C; Slack FJ; Slightam C; Smith R; Spencer WC; Stinson EO; Taing S; Takasaki T; Vafeados D; Voronina K; Wang G; Washington NL; Whittle CM; Wu B; Yan KK; Zeller G; Zha Z; Zhong M; Zhou X; ; Ahringer J; Strome S; Gunsalus KC; Micklem G; Liu XS; Reinke V; Kim SK; Hillier LW; Henikoff S; Piano F; Snyder M; Stein L; Lieb JD; Waterston RH
    Science; 2010 Dec; 330(6012):1775-87. PubMed ID: 21177976
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of
    Kudron MM; Victorsen A; Gevirtzman L; Hillier LW; Fisher WW; Vafeados D; Kirkey M; Hammonds AS; Gersch J; Ammouri H; Wall ML; Moran J; Steffen D; Szynkarek M; Seabrook-Sturgis S; Jameel N; Kadaba M; Patton J; Terrell R; Corson M; Durham TJ; Park S; Samanta S; Han M; Xu J; Yan KK; Celniker SE; White KP; Ma L; Gerstein M; Reinke V; Waterston RH
    Genetics; 2018 Mar; 208(3):937-949. PubMed ID: 29284660
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Functional tests of enhancer conservation between distantly related species.
    Ruvinsky I; Ruvkun G
    Development; 2003 Nov; 130(21):5133-42. PubMed ID: 12944426
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Transcription factor redundancy and tissue-specific regulation: evidence from functional and physical network connectivity.
    Kuntz SG; Williams BA; Sternberg PW; Wold BJ
    Genome Res; 2012 Oct; 22(10):1907-19. PubMed ID: 22730465
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A comparative encyclopedia of DNA elements in the mouse genome.
    Yue F; Cheng Y; Breschi A; Vierstra J; Wu W; Ryba T; Sandstrom R; Ma Z; Davis C; Pope BD; Shen Y; Pervouchine DD; Djebali S; Thurman RE; Kaul R; Rynes E; Kirilusha A; Marinov GK; Williams BA; Trout D; Amrhein H; Fisher-Aylor K; Antoshechkin I; DeSalvo G; See LH; Fastuca M; Drenkow J; Zaleski C; Dobin A; Prieto P; Lagarde J; Bussotti G; Tanzer A; Denas O; Li K; Bender MA; Zhang M; Byron R; Groudine MT; McCleary D; Pham L; Ye Z; Kuan S; Edsall L; Wu YC; Rasmussen MD; Bansal MS; Kellis M; Keller CA; Morrissey CS; Mishra T; Jain D; Dogan N; Harris RS; Cayting P; Kawli T; Boyle AP; Euskirchen G; Kundaje A; Lin S; Lin Y; Jansen C; Malladi VS; Cline MS; Erickson DT; Kirkup VM; Learned K; Sloan CA; Rosenbloom KR; Lacerda de Sousa B; Beal K; Pignatelli M; Flicek P; Lian J; Kahveci T; Lee D; Kent WJ; Ramalho Santos M; Herrero J; Notredame C; Johnson A; Vong S; Lee K; Bates D; Neri F; Diegel M; Canfield T; Sabo PJ; Wilken MS; Reh TA; Giste E; Shafer A; Kutyavin T; Haugen E; Dunn D; Reynolds AP; Neph S; Humbert R; Hansen RS; De Bruijn M; Selleri L; Rudensky A; Josefowicz S; Samstein R; Eichler EE; Orkin SH; Levasseur D; Papayannopoulou T; Chang KH; Skoultchi A; Gosh S; Disteche C; Treuting P; Wang Y; Weiss MJ; Blobel GA; Cao X; Zhong S; Wang T; Good PJ; Lowdon RF; Adams LB; Zhou XQ; Pazin MJ; Feingold EA; Wold B; Taylor J; Mortazavi A; Weissman SM; Stamatoyannopoulos JA; Snyder MP; Guigo R; Gingeras TR; Gilbert DM; Hardison RC; Beer MA; Ren B;
    Nature; 2014 Nov; 515(7527):355-64. PubMed ID: 25409824
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Comparative analysis of metazoan chromatin organization.
    Ho JW; Jung YL; Liu T; Alver BH; Lee S; Ikegami K; Sohn KA; Minoda A; Tolstorukov MY; Appert A; Parker SC; Gu T; Kundaje A; Riddle NC; Bishop E; Egelhofer TA; Hu SS; Alekseyenko AA; Rechtsteiner A; Asker D; Belsky JA; Bowman SK; Chen QB; Chen RA; Day DS; Dong Y; Dose AC; Duan X; Epstein CB; Ercan S; Feingold EA; Ferrari F; Garrigues JM; Gehlenborg N; Good PJ; Haseley P; He D; Herrmann M; Hoffman MM; Jeffers TE; Kharchenko PV; Kolasinska-Zwierz P; Kotwaliwale CV; Kumar N; Langley SA; Larschan EN; Latorre I; Libbrecht MW; Lin X; Park R; Pazin MJ; Pham HN; Plachetka A; Qin B; Schwartz YB; Shoresh N; Stempor P; Vielle A; Wang C; Whittle CM; Xue H; Kingston RE; Kim JH; Bernstein BE; Dernburg AF; Pirrotta V; Kuroda MI; Noble WS; Tullius TD; Kellis M; MacAlpine DM; Strome S; Elgin SC; Liu XS; Lieb JD; Ahringer J; Karpen GH; Park PJ
    Nature; 2014 Aug; 512(7515):449-52. PubMed ID: 25164756
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints.
    Irimia M; Tena JJ; Alexis MS; Fernandez-Miñan A; Maeso I; Bogdanovic O; de la Calle-Mustienes E; Roy SW; Gómez-Skarmeta JL; Fraser HB
    Genome Res; 2012 Dec; 22(12):2356-67. PubMed ID: 22722344
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The in vivo dissection of direct RFX-target gene promoters in C. elegans reveals a novel cis-regulatory element, the C-box.
    Burghoorn J; Piasecki BP; Crona F; Phirke P; Jeppsson KE; Swoboda P
    Dev Biol; 2012 Aug; 368(2):415-26. PubMed ID: 22683808
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Phylum-Level Conservation of Regulatory Information in Nematodes despite Extensive Non-coding Sequence Divergence.
    Gordon KL; Arthur RK; Ruvinsky I
    PLoS Genet; 2015 May; 11(5):e1005268. PubMed ID: 26020930
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Contingency in the convergent evolution of a regulatory network: Dosage compensation in Drosophila.
    Ellison C; Bachtrog D
    PLoS Biol; 2019 Feb; 17(2):e3000094. PubMed ID: 30742611
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 18.