These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

204 related articles for article (PubMed ID: 25198674)

  • 1. Statistical approach of functional profiling for a microbial community.
    An L; Pookhao N; Jiang H; Xu J
    PLoS One; 2014; 9(9):e106588. PubMed ID: 25198674
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A two-stage statistical procedure for feature selection and comparison in functional analysis of metagenomes.
    Pookhao N; Sohn MB; Li Q; Jenkins I; Du R; Jiang H; An L
    Bioinformatics; 2015 Jan; 31(2):158-65. PubMed ID: 25256572
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A statistical framework for accurate taxonomic assignment of metagenomic sequencing reads.
    Jiang H; An L; Lin SM; Feng G; Qiu Y
    PLoS One; 2012; 7(10):e46450. PubMed ID: 23049702
    [TBL] [Abstract][Full Text] [Related]  

  • 4. An Agile Functional Analysis of Metagenomic Data Using SUPER-FOCUS.
    Silva GGZ; Lopes FAC; Edwards RA
    Methods Mol Biol; 2017; 1611():35-44. PubMed ID: 28451970
    [TBL] [Abstract][Full Text] [Related]  

  • 5. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
    Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
    [TBL] [Abstract][Full Text] [Related]  

  • 6. UltraSEQ, a Universal Bioinformatic Platform for Information-Based Clinical Metagenomics and Beyond.
    Gemler BT; Mukherjee C; Howland C; Fullerton PA; Spurbeck RR; Catlin LA; Smith A; Minard-Smith AT; Bartling C
    Microbiol Spectr; 2023 Jun; 11(3):e0416022. PubMed ID: 37039637
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Parallel-META 2.0: enhanced metagenomic data analysis with functional annotation, high performance computing and advanced visualization.
    Su X; Pan W; Song B; Xu J; Ning K
    PLoS One; 2014; 9(3):e89323. PubMed ID: 24595159
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function.
    Keegan KP; Glass EM; Meyer F
    Methods Mol Biol; 2016; 1399():207-33. PubMed ID: 26791506
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Phylogeny-based classification of microbial communities.
    Tanaseichuk O; Borneman J; Jiang T
    Bioinformatics; 2014 Feb; 30(4):449-56. PubMed ID: 24369151
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A New Unsupervised Binning Approach for Metagenomic Sequences Based on N-grams and Automatic Feature Weighting.
    Liao R; Zhang R; Guan J; Zhou S
    IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(1):42-54. PubMed ID: 26355506
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Practical considerations for sampling and data analysis in contemporary metagenomics-based environmental studies.
    Staley C; Sadowsky MJ
    J Microbiol Methods; 2018 Nov; 154():14-18. PubMed ID: 30287354
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Statistical correction for functional metagenomic profiling of a microbial community with short NGS reads.
    Du R; Fang Z
    J Appl Stat; 2018; 45(14):2521-2535. PubMed ID: 30505061
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples.
    LaPierre N; Mangul S; Alser M; Mandric I; Wu NC; Koslicki D; Eskin E
    BMC Genomics; 2019 Jun; 20(Suppl 5):423. PubMed ID: 31167634
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences.
    Wang Z; Wang Y; Fuhrman JA; Sun F; Zhu S
    Brief Bioinform; 2020 May; 21(3):777-790. PubMed ID: 30860572
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Accurate genome relative abundance estimation based on shotgun metagenomic reads.
    Xia LC; Cram JA; Chen T; Fuhrman JA; Sun F
    PLoS One; 2011; 6(12):e27992. PubMed ID: 22162995
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
    Du N; Chen J; Sun Y
    BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A bioinformatics pipeline integrating predictive metagenomics profiling for the analysis of 16S rDNA/rRNA sequencing data originated from foods.
    Mataragas M; Alessandria V; Ferrocino I; Rantsiou K; Cocolin L
    Food Microbiol; 2018 Dec; 76():279-286. PubMed ID: 30166151
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Metagenomic mining for microbiologists.
    Delmont TO; Malandain C; Prestat E; Larose C; Monier JM; Simonet P; Vogel TM
    ISME J; 2011 Dec; 5(12):1837-43. PubMed ID: 21593798
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis.
    Dubinkina VB; Ischenko DS; Ulyantsev VI; Tyakht AV; Alexeev DG
    BMC Bioinformatics; 2016 Jan; 17():38. PubMed ID: 26774270
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Assessment of metagenomic assembly using simulated next generation sequencing data.
    Mende DR; Waller AS; Sunagawa S; Järvelin AI; Chan MM; Arumugam M; Raes J; Bork P
    PLoS One; 2012; 7(2):e31386. PubMed ID: 22384016
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.