329 related articles for article (PubMed ID: 25213249)
1. Global analysis of transcription factor-binding sites in yeast using ChIP-Seq.
Lefrançois P; Gallagher JE; Snyder M
Methods Mol Biol; 2014; 1205():231-55. PubMed ID: 25213249
[TBL] [Abstract][Full Text] [Related]
2. Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing.
Lefrançois P; Euskirchen GM; Auerbach RK; Rozowsky J; Gibson T; Yellman CM; Gerstein M; Snyder M
BMC Genomics; 2009 Jan; 10():37. PubMed ID: 19159457
[TBL] [Abstract][Full Text] [Related]
3. Chromatin Immunoprecipitation in Human and Yeast Cells.
Lee JB; Keung AJ
Methods Mol Biol; 2018; 1767():257-269. PubMed ID: 29524140
[TBL] [Abstract][Full Text] [Related]
4. Chromatin immunoprecipitation and multiplex sequencing (ChIP-Seq) to identify global transcription factor binding sites in the nematode Caenorhabditis elegans.
Brdlik CM; Niu W; Snyder M
Methods Enzymol; 2014; 539():89-111. PubMed ID: 24581441
[TBL] [Abstract][Full Text] [Related]
5. ChIP-Seq: a method for global identification of regulatory elements in the genome.
Raha D; Hong M; Snyder M
Curr Protoc Mol Biol; 2010 Jul; Chapter 21():Unit 21.19.1-14. PubMed ID: 20583098
[TBL] [Abstract][Full Text] [Related]
6. ChIP-Seq using high-throughput DNA sequencing for genome-wide identification of transcription factor binding sites.
Lefrançois P; Zheng W; Snyder M
Methods Enzymol; 2010; 470():77-104. PubMed ID: 20946807
[TBL] [Abstract][Full Text] [Related]
7. Characterization of in vivo DNA-binding events of plant transcription factors by ChIP-seq: experimental protocol and computational analysis.
van Mourik H; Muiño JM; Pajoro A; Angenent GC; Kaufmann K
Methods Mol Biol; 2015; 1284():93-121. PubMed ID: 25757769
[TBL] [Abstract][Full Text] [Related]
8. Chromatin analyses of Zymoseptoria tritici: Methods for chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq).
Soyer JL; Möller M; Schotanus K; Connolly LR; Galazka JM; Freitag M; Stukenbrock EH
Fungal Genet Biol; 2015 Jun; 79():63-70. PubMed ID: 25857259
[TBL] [Abstract][Full Text] [Related]
9. ChIP-Seq Analysis in Neurospora crassa.
Ferraro AR; Lewis ZA
Methods Mol Biol; 2018; 1775():241-250. PubMed ID: 29876822
[TBL] [Abstract][Full Text] [Related]
10. Cell-type specificity of ChIP-predicted transcription factor binding sites.
Håndstad T; Rye M; Močnik R; Drabløs F; Sætrom P
BMC Genomics; 2012 Aug; 13():372. PubMed ID: 22863112
[TBL] [Abstract][Full Text] [Related]
11. Genome-wide mapping of nucleosome positions in yeast using high-resolution MNase ChIP-Seq.
Wal M; Pugh BF
Methods Enzymol; 2012; 513():233-50. PubMed ID: 22929772
[TBL] [Abstract][Full Text] [Related]
12. ChIPulate: A comprehensive ChIP-seq simulation pipeline.
Datta V; Hannenhalli S; Siddharthan R
PLoS Comput Biol; 2019 Mar; 15(3):e1006921. PubMed ID: 30897079
[TBL] [Abstract][Full Text] [Related]
13. ChIP-exo method for identifying genomic location of DNA-binding proteins with near-single-nucleotide accuracy.
Rhee HS; Pugh BF
Curr Protoc Mol Biol; 2012 Oct; Chapter 21():Unit 21.24. PubMed ID: 23026909
[TBL] [Abstract][Full Text] [Related]
14. Chromatin Immunoprecipitation and High-Throughput Sequencing (ChIP-Seq): Tips and Tricks Regarding the Laboratory Protocol and Initial Downstream Data Analysis.
Patten DK; Corleone G; Magnani L
Methods Mol Biol; 2018; 1767():271-288. PubMed ID: 29524141
[TBL] [Abstract][Full Text] [Related]
15. A map of direct TF-DNA interactions in the human genome.
Gheorghe M; Sandve GK; Khan A; Chèneby J; Ballester B; Mathelier A
Nucleic Acids Res; 2019 Feb; 47(4):e21. PubMed ID: 30517703
[TBL] [Abstract][Full Text] [Related]
16. Integrative analysis of ChIP-chip and ChIP-seq dataset.
Zhu LJ
Methods Mol Biol; 2013; 1067():105-24. PubMed ID: 23975789
[TBL] [Abstract][Full Text] [Related]
17. Analyzing transcription factor occupancy during embryo development using ChIP-seq.
Ghavi-Helm Y; Furlong EE
Methods Mol Biol; 2012; 786():229-45. PubMed ID: 21938630
[TBL] [Abstract][Full Text] [Related]
18. Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-Seq data.
Chung D; Kuan PF; Li B; Sanalkumar R; Liang K; Bresnick EH; Dewey C; Keleş S
PLoS Comput Biol; 2011 Jul; 7(7):e1002111. PubMed ID: 21779159
[TBL] [Abstract][Full Text] [Related]
19. ChIP-Seq: Library Preparation and Sequencing.
Sheaffer KL; Schug J
Methods Mol Biol; 2016; 1402():101-117. PubMed ID: 26721486
[TBL] [Abstract][Full Text] [Related]
20. μChIP-Seq for Genome-Wide Mapping of In Vivo TF-DNA Interactions in Arabidopsis Root Protoplasts.
Para A; Li Y; Coruzzi GM
Methods Mol Biol; 2018; 1761():249-261. PubMed ID: 29525963
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]