These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

355 related articles for article (PubMed ID: 25220462)

  • 1. Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana.
    Sullivan AM; Arsovski AA; Lempe J; Bubb KL; Weirauch MT; Sabo PJ; Sandstrom R; Thurman RE; Neph S; Reynolds AP; Stergachis AB; Vernot B; Johnson AK; Haugen E; Sullivan ST; Thompson A; Neri FV; Weaver M; Diegel M; Mnaimneh S; Yang A; Hughes TR; Nemhauser JL; Queitsch C; Stamatoyannopoulos JA
    Cell Rep; 2014 Sep; 8(6):2015-2030. PubMed ID: 25220462
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genomic Footprinting Analyses from DNase-seq Data to Construct Gene Regulatory Networks.
    Moyano TC; GutiƩrrez RA; Alvarez JM
    Methods Mol Biol; 2021; 2328():25-46. PubMed ID: 34251618
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Genome-wide identification of regulatory DNA elements and protein-binding footprints using signatures of open chromatin in Arabidopsis.
    Zhang W; Zhang T; Wu Y; Jiang J
    Plant Cell; 2012 Jul; 24(7):2719-31. PubMed ID: 22773751
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Similar bowtie structures and distinct largest strong components are identified in the transcriptional regulatory networks of Arabidopsis thaliana during photomorphogenesis and heat shock.
    Luo S; Zhang F; Ruan Y; Li J; Zhang Z; Sun Y; Deng S; Peng R
    Biosystems; 2018 Jun; 168():1-7. PubMed ID: 29715506
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Mapping and characterization of DNase I hypersensitive sites in Arabidopsis chromatin.
    Kodama Y; Nagaya S; Shinmyo A; Kato K
    Plant Cell Physiol; 2007 Mar; 48(3):459-70. PubMed ID: 17283013
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Genome-wide mapping of DNase I hypersensitive sites in plants.
    Zhang W; Jiang J
    Methods Mol Biol; 2015; 1284():71-89. PubMed ID: 25757768
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Genome-wide discovery of active regulatory elements and transcription factor footprints in
    Ho MCW; Quintero-Cadena P; Sternberg PW
    Genome Res; 2017 Dec; 27(12):2108-2119. PubMed ID: 29074739
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Predictive Models of Spatial Transcriptional Response to High Salinity.
    Uygun S; Seddon AE; Azodi CB; Shiu SH
    Plant Physiol; 2017 May; 174(1):450-464. PubMed ID: 28373393
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Local Changes in Chromatin Accessibility and Transcriptional Networks Underlying the Nitrate Response in Arabidopsis Roots.
    Alvarez JM; Moyano TC; Zhang T; Gras DE; Herrera FJ; Araus V; O'Brien JA; Carrillo L; Medina J; Vicente-Carbajosa J; Jiang J; GutiƩrrez RA
    Mol Plant; 2019 Dec; 12(12):1545-1560. PubMed ID: 31526863
    [TBL] [Abstract][Full Text] [Related]  

  • 10. AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    Davuluri RV; Sun H; Palaniswamy SK; Matthews N; Molina C; Kurtz M; Grotewold E
    BMC Bioinformatics; 2003 Jun; 4():25. PubMed ID: 12820902
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PlantDHS: a database for DNase I hypersensitive sites in plants.
    Zhang T; Marand AP; Jiang J
    Nucleic Acids Res; 2016 Jan; 44(D1):D1148-53. PubMed ID: 26400163
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Genome-Wide Analysis of the Distinct Types of Chromatin Interactions in Arabidopsis thaliana.
    Wang J; Zhou Y; Li X; Meng X; Fan M; Chen H; Xue J; Chen M
    Plant Cell Physiol; 2017 Jan; 58(1):57-70. PubMed ID: 28064247
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Genome-wide mapping of transcription factor binding reveals developmental process integration and a fresh look at evolutionary dynamics.
    Yant L
    Am J Bot; 2012 Feb; 99(2):277-90. PubMed ID: 22268222
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Global reference mapping of human transcription factor footprints.
    Vierstra J; Lazar J; Sandstrom R; Halow J; Lee K; Bates D; Diegel M; Dunn D; Neri F; Haugen E; Rynes E; Reynolds A; Nelson J; Johnson A; Frerker M; Buckley M; Kaul R; Meuleman W; Stamatoyannopoulos JA
    Nature; 2020 Jul; 583(7818):729-736. PubMed ID: 32728250
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Determinants of correlated expression of transcription factors and their target genes.
    Zaborowski AB; Walther D
    Nucleic Acids Res; 2020 Nov; 48(20):11347-11369. PubMed ID: 33104784
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Evolution of Cis-Regulatory Elements and Regulatory Networks in Duplicated Genes of Arabidopsis.
    Arsovski AA; Pradinuk J; Guo XQ; Wang S; Adams KL
    Plant Physiol; 2015 Dec; 169(4):2982-91. PubMed ID: 26474639
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Gene expression regulation in photomorphogenesis from the perspective of the central dogma.
    Wu SH
    Annu Rev Plant Biol; 2014; 65():311-33. PubMed ID: 24779996
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Integration of Genome-Wide TF Binding and Gene Expression Data to Characterize Gene Regulatory Networks in Plant Development.
    Chen D; Kaufmann K
    Methods Mol Biol; 2017; 1629():239-269. PubMed ID: 28623590
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genome-wide chromatin accessibility landscape and dynamics of transcription factor networks during ovule and fiber development in cotton.
    Bao Y; Wei Y; Liu Y; Gao J; Cheng S; Liu G; You Q; Liu P; Lu Q; Li P; Zhang S; Hu N; Han Y; Liu S; Wu Y; Yang Q; Li Z; Ao G; Liu F; Wang K; Jiang J; Zhang T; Zhang W; Peng R
    BMC Biol; 2023 Jul; 21(1):165. PubMed ID: 37525156
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Genome-Wide Characterization of DNase I-Hypersensitive Sites and Cold Response Regulatory Landscapes in Grasses.
    Han J; Wang P; Wang Q; Lin Q; Chen Z; Yu G; Miao C; Dao Y; Wu R; Schnable JC; Tang H; Wang K
    Plant Cell; 2020 Aug; 32(8):2457-2473. PubMed ID: 32471863
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 18.