303 related articles for article (PubMed ID: 25236461)
1. The Ensembl REST API: Ensembl Data for Any Language.
Yates A; Beal K; Keenan S; McLaren W; Pignatelli M; Ritchie GR; Ruffier M; Taylor K; Vullo A; Flicek P
Bioinformatics; 2015 Jan; 31(1):143-5. PubMed ID: 25236461
[TBL] [Abstract][Full Text] [Related]
2. JASPAR RESTful API: accessing JASPAR data from any programming language.
Khan A; Mathelier A
Bioinformatics; 2018 May; 34(9):1612-1614. PubMed ID: 29253085
[TBL] [Abstract][Full Text] [Related]
3. Ensembl 2015.
Cunningham F; Amode MR; Barrell D; Beal K; Billis K; Brent S; Carvalho-Silva D; Clapham P; Coates G; Fitzgerald S; Gil L; Girón CG; Gordon L; Hourlier T; Hunt SE; Janacek SH; Johnson N; Juettemann T; Kähäri AK; Keenan S; Martin FJ; Maurel T; McLaren W; Murphy DN; Nag R; Overduin B; Parker A; Patricio M; Perry E; Pignatelli M; Riat HS; Sheppard D; Taylor K; Thormann A; Vullo A; Wilder SP; Zadissa A; Aken BL; Birney E; Harrow J; Kinsella R; Muffato M; Ruffier M; Searle SM; Spudich G; Trevanion SJ; Yates A; Zerbino DR; Flicek P
Nucleic Acids Res; 2015 Jan; 43(Database issue):D662-9. PubMed ID: 25352552
[TBL] [Abstract][Full Text] [Related]
4. Programmatic access to logical models in the Cell Collective modeling environment via a REST API.
Kowal BM; Schreier TR; Dauer JT; Helikar T
Biosystems; 2016 Jan; 139():12-6. PubMed ID: 26589448
[TBL] [Abstract][Full Text] [Related]
5. The geospatial data quality REST API for primary biodiversity data.
Otegui J; Guralnick RP
Bioinformatics; 2016 Jun; 32(11):1755-7. PubMed ID: 26833340
[TBL] [Abstract][Full Text] [Related]
6. BioServices: a common Python package to access biological Web Services programmatically.
Cokelaer T; Pultz D; Harder LM; Serra-Musach J; Saez-Rodriguez J
Bioinformatics; 2013 Dec; 29(24):3241-2. PubMed ID: 24064416
[TBL] [Abstract][Full Text] [Related]
7. Phylesystem: a git-based data store for community-curated phylogenetic estimates.
McTavish EJ; Hinchliff CE; Allman JF; Brown JW; Cranston KA; Holder MT; Rees JA; Smith SA
Bioinformatics; 2015 Sep; 31(17):2794-800. PubMed ID: 25940563
[TBL] [Abstract][Full Text] [Related]
8. Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor.
McLaren W; Pritchard B; Rios D; Chen Y; Flicek P; Cunningham F
Bioinformatics; 2010 Aug; 26(16):2069-70. PubMed ID: 20562413
[TBL] [Abstract][Full Text] [Related]
9. Whiteboard: a framework for the programmatic visualization of complex biological analyses.
Sundström G; Zamani N; Grabherr MG; Mauceli E
Bioinformatics; 2015 Jun; 31(12):2054-5. PubMed ID: 25661541
[TBL] [Abstract][Full Text] [Related]
10. JEnsembl: a version-aware Java API to Ensembl data systems.
Paterson T; Law A
Bioinformatics; 2012 Nov; 28(21):2724-31. PubMed ID: 22945789
[TBL] [Abstract][Full Text] [Related]
11. The GPMDB REST interface.
Fenyö D; Beavis RC
Bioinformatics; 2015 Jun; 31(12):2056-8. PubMed ID: 25697819
[TBL] [Abstract][Full Text] [Related]
12. Ensembl 2017.
Aken BL; Achuthan P; Akanni W; Amode MR; Bernsdorff F; Bhai J; Billis K; Carvalho-Silva D; Cummins C; Clapham P; Gil L; Girón CG; Gordon L; Hourlier T; Hunt SE; Janacek SH; Juettemann T; Keenan S; Laird MR; Lavidas I; Maurel T; McLaren W; Moore B; Murphy DN; Nag R; Newman V; Nuhn M; Ong CK; Parker A; Patricio M; Riat HS; Sheppard D; Sparrow H; Taylor K; Thormann A; Vullo A; Walts B; Wilder SP; Zadissa A; Kostadima M; Martin FJ; Muffato M; Perry E; Ruffier M; Staines DM; Trevanion SJ; Cunningham F; Yates A; Zerbino DR; Flicek P
Nucleic Acids Res; 2017 Jan; 45(D1):D635-D642. PubMed ID: 27899575
[TBL] [Abstract][Full Text] [Related]
13. The Gene Set Builder: collation, curation, and distribution of sets of genes.
Yusuf D; Lim JS; Wasserman WW
BMC Bioinformatics; 2005 Dec; 6():305. PubMed ID: 16371163
[TBL] [Abstract][Full Text] [Related]
14. Annotating and prioritizing genomic variants using the Ensembl Variant Effect Predictor-A tutorial.
Hunt SE; Moore B; Amode RM; Armean IM; Lemos D; Mushtaq A; Parton A; Schuilenburg H; Szpak M; Thormann A; Perry E; Trevanion SJ; Flicek P; Yates AD; Cunningham F
Hum Mutat; 2022 Aug; 43(8):986-997. PubMed ID: 34816521
[TBL] [Abstract][Full Text] [Related]
15. SeqRepo: A system for managing local collections of biological sequences.
Hart RK; Prlić A
PLoS One; 2020; 15(12):e0239883. PubMed ID: 33270643
[TBL] [Abstract][Full Text] [Related]
16. BioRuby: bioinformatics software for the Ruby programming language.
Goto N; Prins P; Nakao M; Bonnal R; Aerts J; Katayama T
Bioinformatics; 2010 Oct; 26(20):2617-9. PubMed ID: 20739307
[TBL] [Abstract][Full Text] [Related]
17. DendroPy: a Python library for phylogenetic computing.
Sukumaran J; Holder MT
Bioinformatics; 2010 Jun; 26(12):1569-71. PubMed ID: 20421198
[TBL] [Abstract][Full Text] [Related]
18. Retrieve-ensembl-seq: user-friendly and large-scale retrieval of single or multi-genome sequences from Ensembl.
Sand O; Thomas-Chollier M; van Helden J
Bioinformatics; 2009 Oct; 25(20):2739-40. PubMed ID: 19720677
[TBL] [Abstract][Full Text] [Related]
19. Ensembl 2016.
Yates A; Akanni W; Amode MR; Barrell D; Billis K; Carvalho-Silva D; Cummins C; Clapham P; Fitzgerald S; Gil L; Girón CG; Gordon L; Hourlier T; Hunt SE; Janacek SH; Johnson N; Juettemann T; Keenan S; Lavidas I; Martin FJ; Maurel T; McLaren W; Murphy DN; Nag R; Nuhn M; Parker A; Patricio M; Pignatelli M; Rahtz M; Riat HS; Sheppard D; Taylor K; Thormann A; Vullo A; Wilder SP; Zadissa A; Birney E; Harrow J; Muffato M; Perry E; Ruffier M; Spudich G; Trevanion SJ; Cunningham F; Aken BL; Zerbino DR; Flicek P
Nucleic Acids Res; 2016 Jan; 44(D1):D710-6. PubMed ID: 26687719
[TBL] [Abstract][Full Text] [Related]
20. Ensembl's 10th year.
Flicek P; Aken BL; Ballester B; Beal K; Bragin E; Brent S; Chen Y; Clapham P; Coates G; Fairley S; Fitzgerald S; Fernandez-Banet J; Gordon L; Gräf S; Haider S; Hammond M; Howe K; Jenkinson A; Johnson N; Kähäri A; Keefe D; Keenan S; Kinsella R; Kokocinski F; Koscielny G; Kulesha E; Lawson D; Longden I; Massingham T; McLaren W; Megy K; Overduin B; Pritchard B; Rios D; Ruffier M; Schuster M; Slater G; Smedley D; Spudich G; Tang YA; Trevanion S; Vilella A; Vogel J; White S; Wilder SP; Zadissa A; Birney E; Cunningham F; Dunham I; Durbin R; Fernández-Suarez XM; Herrero J; Hubbard TJ; Parker A; Proctor G; Smith J; Searle SM
Nucleic Acids Res; 2010 Jan; 38(Database issue):D557-62. PubMed ID: 19906699
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
