These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

167 related articles for article (PubMed ID: 25237057)

  • 1. SNP-guided identification of monoallelic DNA-methylation events from enrichment-based sequencing data.
    Steyaert S; Van Criekinge W; De Paepe A; Denil S; Mensaert K; Vandepitte K; Vanden Berghe W; Trooskens G; De Meyer T
    Nucleic Acids Res; 2014 Nov; 42(20):e157. PubMed ID: 25237057
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.
    Harris RA; Wang T; Coarfa C; Nagarajan RP; Hong C; Downey SL; Johnson BE; Fouse SD; Delaney A; Zhao Y; Olshen A; Ballinger T; Zhou X; Forsberg KJ; Gu J; Echipare L; O'Geen H; Lister R; Pelizzola M; Xi Y; Epstein CB; Bernstein BE; Hawkins RD; Ren B; Chung WY; Gu H; Bock C; Gnirke A; Zhang MQ; Haussler D; Ecker JR; Li W; Farnham PJ; Waterland RA; Meissner A; Marra MA; Hirst M; Milosavljevic A; Costello JF
    Nat Biotechnol; 2010 Oct; 28(10):1097-105. PubMed ID: 20852635
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods.
    Stevens M; Cheng JB; Li D; Xie M; Hong C; Maire CL; Ligon KL; Hirst M; Marra MA; Costello JF; Wang T
    Genome Res; 2013 Sep; 23(9):1541-53. PubMed ID: 23804401
    [TBL] [Abstract][Full Text] [Related]  

  • 4. QSEA-modelling of genome-wide DNA methylation from sequencing enrichment experiments.
    Lienhard M; Grasse S; Rolff J; Frese S; Schirmer U; Becker M; Börno S; Timmermann B; Chavez L; Sültmann H; Leschber G; Fichtner I; Schweiger MR; Herwig R
    Nucleic Acids Res; 2017 Apr; 45(6):e44. PubMed ID: 27913729
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PrEMeR-CG: inferring nucleotide level DNA methylation values from MethylCap-seq data.
    Frankhouser DE; Murphy M; Blachly JS; Park J; Zoller MW; Ganbat JO; Curfman J; Byrd JC; Lin S; Marcucci G; Yan P; Bundschuh R
    Bioinformatics; 2014 Dec; 30(24):3567-74. PubMed ID: 25178460
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Development and application of an integrated allele-specific pipeline for methylomic and epigenomic analysis (MEA).
    Richard Albert J; Koike T; Younesy H; Thompson R; Bogutz AB; Karimi MM; Lorincz MC
    BMC Genomics; 2018 Jun; 19(1):463. PubMed ID: 29907088
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm.
    Zhang B; Zhou Y; Lin N; Lowdon RF; Hong C; Nagarajan RP; Cheng JB; Li D; Stevens M; Lee HJ; Xing X; Zhou J; Sundaram V; Elliott G; Gu J; Shi T; Gascard P; Sigaroudinia M; Tlsty TD; Kadlecek T; Weiss A; O'Geen H; Farnham PJ; Maire CL; Ligon KL; Madden PA; Tam A; Moore R; Hirst M; Marra MA; Zhang B; Costello JF; Wang T
    Genome Res; 2013 Sep; 23(9):1522-40. PubMed ID: 23804400
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Using RNA sequencing for identifying gene imprinting and random monoallelic expression in human placenta.
    Metsalu T; Viltrop T; Tiirats A; Rajashekar B; Reimann E; Kõks S; Rull K; Milani L; Acharya G; Basnet P; Vilo J; Mägi R; Metspalu A; Peters M; Haller-Kikkatalo K; Salumets A
    Epigenetics; 2014 Oct; 9(10):1397-409. PubMed ID: 25437054
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Combining MeDIP-seq and MRE-seq to investigate genome-wide CpG methylation.
    Li D; Zhang B; Xing X; Wang T
    Methods; 2015 Jan; 72():29-40. PubMed ID: 25448294
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Analysis of Imprinted Gene Regulation.
    Skaar DA; Jirtle RL
    Methods Mol Biol; 2017; 1589():161-183. PubMed ID: 26526297
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model.
    Schachtschneider KM; Madsen O; Park C; Rund LA; Groenen MA; Schook LB
    BMC Genomics; 2015 Oct; 16():743. PubMed ID: 26438392
    [TBL] [Abstract][Full Text] [Related]  

  • 12. DAMEfinder: a method to detect differential allele-specific methylation.
    Orjuela S; Machlab D; Menigatti M; Marra G; Robinson MD
    Epigenetics Chromatin; 2020 Jun; 13(1):25. PubMed ID: 32487212
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Enrichment-based DNA methylation analysis using next-generation sequencing: sample exclusion, estimating changes in global methylation, and the contribution of replicate lanes.
    Trimarchi MP; Murphy M; Frankhouser D; Rodriguez BA; Curfman J; Marcucci G; Yan P; Bundschuh R
    BMC Genomics; 2012; 13 Suppl 8(Suppl 8):S6. PubMed ID: 23281662
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A genome-wide search for epigenetically [corrected] regulated genes in zebra finch using MethylCap-seq and RNA-seq.
    Steyaert S; Diddens J; Galle J; De Meester E; De Keulenaer S; Bakker A; Sohnius-Wilhelmi N; Frankl-Vilches C; Van der Linden A; Van Criekinge W; Vanden Berghe W; De Meyer T
    Sci Rep; 2016 Feb; 6():20957. PubMed ID: 26864856
    [TBL] [Abstract][Full Text] [Related]  

  • 15. GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.
    Rentería ME; Coolen MW; Statham AL; Choi RS; Qu W; Campbell MJ; Smith S; Henders AK; Montgomery GW; Clark SJ; Martin NG; Medland SE
    Twin Res Hum Genet; 2013 Aug; 16(4):767-81. PubMed ID: 23725790
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Whole-genome DNA methylation profiling using MethylCap-seq.
    Brinkman AB; Simmer F; Ma K; Kaan A; Zhu J; Stunnenberg HG
    Methods; 2010 Nov; 52(3):232-6. PubMed ID: 20542119
    [TBL] [Abstract][Full Text] [Related]  

  • 17. pWGBSSimla: a profile-based whole-genome bisulfite sequencing data simulator incorporating methylation QTLs, allele-specific methylations and differentially methylated regions.
    Chung RH; Kang CY
    Bioinformatics; 2020 Feb; 36(3):660-665. PubMed ID: 31397839
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Analyzing the cancer methylome through targeted bisulfite sequencing.
    Lee EJ; Luo J; Wilson JM; Shi H
    Cancer Lett; 2013 Nov; 340(2):171-8. PubMed ID: 23200671
    [TBL] [Abstract][Full Text] [Related]  

  • 19. BS-SNPer: SNP calling in bisulfite-seq data.
    Gao S; Zou D; Mao L; Liu H; Song P; Chen Y; Zhao S; Gao C; Li X; Gao Z; Fang X; Yang H; Ørntoft TF; Sørensen KD; Bolund L
    Bioinformatics; 2015 Dec; 31(24):4006-8. PubMed ID: 26319221
    [TBL] [Abstract][Full Text] [Related]  

  • 20. GBSA: a comprehensive software for analysing whole genome bisulfite sequencing data.
    Benoukraf T; Wongphayak S; Hadi LH; Wu M; Soong R
    Nucleic Acids Res; 2013 Feb; 41(4):e55. PubMed ID: 23268441
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.