145 related articles for article (PubMed ID: 25252708)
1. Near-optimal assembly for shotgun sequencing with noisy reads.
Lam KK; Khalak A; Tse D
BMC Bioinformatics; 2014; 15 Suppl 9(Suppl 9):S4. PubMed ID: 25252708
[TBL] [Abstract][Full Text] [Related]
2. Identification of optimum sequencing depth especially for de novo genome assembly of small genomes using next generation sequencing data.
Desai A; Marwah VS; Yadav A; Jha V; Dhaygude K; Bangar U; Kulkarni V; Jere A
PLoS One; 2013; 8(4):e60204. PubMed ID: 23593174
[TBL] [Abstract][Full Text] [Related]
3. Improving de novo Assembly Based on Read Classification.
Liao X; Li M; Luo J; Zou Y; Wu FX; Pan Y; Luo F; Wang J
IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(1):177-188. PubMed ID: 30059317
[TBL] [Abstract][Full Text] [Related]
4. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.
Cherukuri Y; Janga SC
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):507. PubMed ID: 27556636
[TBL] [Abstract][Full Text] [Related]
5. Illumina error correction near highly repetitive DNA regions improves de novo genome assembly.
Heydari M; Miclotte G; Van de Peer Y; Fostier J
BMC Bioinformatics; 2019 Jun; 20(1):298. PubMed ID: 31159722
[TBL] [Abstract][Full Text] [Related]
6. ALLPATHS: de novo assembly of whole-genome shotgun microreads.
Butler J; MacCallum I; Kleber M; Shlyakhter IA; Belmonte MK; Lander ES; Nusbaum C; Jaffe DB
Genome Res; 2008 May; 18(5):810-20. PubMed ID: 18340039
[TBL] [Abstract][Full Text] [Related]
7. GAPPadder: a sensitive approach for closing gaps on draft genomes with short sequence reads.
Chu C; Li X; Wu Y
BMC Genomics; 2019 Jun; 20(Suppl 5):426. PubMed ID: 31167639
[TBL] [Abstract][Full Text] [Related]
8. Integrating sequencing technologies in personal genomics: optimal low cost reconstruction of structural variants.
Du J; Bjornson RD; Zhang ZD; Kong Y; Snyder M; Gerstein MB
PLoS Comput Biol; 2009 Jul; 5(7):e1000432. PubMed ID: 19593373
[TBL] [Abstract][Full Text] [Related]
9. Improving de novo sequence assembly using machine learning and comparative genomics for overlap correction.
Palmer LE; Dejori M; Bolanos R; Fasulo D
BMC Bioinformatics; 2010 Jan; 11():33. PubMed ID: 20078885
[TBL] [Abstract][Full Text] [Related]
10. Optimal assembly for high throughput shotgun sequencing.
Bresler G; Bresler M; Tse D
BMC Bioinformatics; 2013; 14 Suppl 5(Suppl 5):S18. PubMed ID: 23902516
[TBL] [Abstract][Full Text] [Related]
11. RepLong: de novo repeat identification using long read sequencing data.
Guo R; Li YR; He S; Ou-Yang L; Sun Y; Zhu Z
Bioinformatics; 2018 Apr; 34(7):1099-1107. PubMed ID: 29126180
[TBL] [Abstract][Full Text] [Related]
12. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.
Chin CS; Alexander DH; Marks P; Klammer AA; Drake J; Heiner C; Clum A; Copeland A; Huddleston J; Eichler EE; Turner SW; Korlach J
Nat Methods; 2013 Jun; 10(6):563-9. PubMed ID: 23644548
[TBL] [Abstract][Full Text] [Related]
13. Assessing the impact of exact reads on reducing the error rate of read mapping.
Salari F; Zare-Mirakabad F; Sadeghi M; Rokni-Zadeh H
BMC Bioinformatics; 2018 Nov; 19(1):406. PubMed ID: 30400807
[TBL] [Abstract][Full Text] [Related]
14. SeqEntropy: genome-wide assessment of repeats for short read sequencing.
Chu HT; Hsiao WW; Tsao TT; Hsu DF; Chen CC; Lee SA; Kao CY
PLoS One; 2013; 8(3):e59484. PubMed ID: 23544073
[TBL] [Abstract][Full Text] [Related]
15. Correcting errors in shotgun sequences.
Tammi MT; Arner E; Kindlund E; Andersson B
Nucleic Acids Res; 2003 Aug; 31(15):4663-72. PubMed ID: 12888528
[TBL] [Abstract][Full Text] [Related]
16. Hybrid assembly of the large and highly repetitive genome of
Zimin AV; Puiu D; Luo MC; Zhu T; Koren S; Marçais G; Yorke JA; Dvořák J; Salzberg SL
Genome Res; 2017 May; 27(5):787-792. PubMed ID: 28130360
[TBL] [Abstract][Full Text] [Related]
17. Evaluation and Validation of Assembling Corrected PacBio Long Reads for Microbial Genome Completion via Hybrid Approaches.
Lin HH; Liao YC
PLoS One; 2015; 10(12):e0144305. PubMed ID: 26641475
[TBL] [Abstract][Full Text] [Related]
18. EPGA: de novo assembly using the distributions of reads and insert size.
Luo J; Wang J; Zhang Z; Wu FX; Li M; Pan Y
Bioinformatics; 2015 Mar; 31(6):825-33. PubMed ID: 25406329
[TBL] [Abstract][Full Text] [Related]
19. Assembly of large genomes using second-generation sequencing.
Schatz MC; Delcher AL; Salzberg SL
Genome Res; 2010 Sep; 20(9):1165-73. PubMed ID: 20508146
[TBL] [Abstract][Full Text] [Related]
20. Read length and repeat resolution: exploring prokaryote genomes using next-generation sequencing technologies.
Cahill MJ; Köser CU; Ross NE; Archer JA
PLoS One; 2010 Jul; 5(7):e11518. PubMed ID: 20634954
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
