These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

198 related articles for article (PubMed ID: 25253206)

  • 1. ProbeAlign: incorporating high-throughput sequencing-based structure probing information into ncRNA homology search.
    Ge P; Zhong C; Zhang S
    BMC Bioinformatics; 2014; 15 Suppl 9(Suppl 9):S15. PubMed ID: 25253206
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Structure-based whole-genome realignment reveals many novel noncoding RNAs.
    Will S; Yu M; Berger B
    Genome Res; 2013 Jun; 23(6):1018-27. PubMed ID: 23296921
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Chain-RNA: a comparative ncRNA search tool based on the two-dimensional chain algorithm.
    Lei J; Techa-Angkoon P; Sun Y
    IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(2):274-85. PubMed ID: 23929857
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Genome-scale NCRNA homology search using a Hamming distance-based filtration strategy.
    Sun Y; Aljawad O; Lei J; Liu A
    BMC Bioinformatics; 2012 Mar; 13 Suppl 3(Suppl 3):S12. PubMed ID: 22536896
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Designing secondary structure profiles for fast ncRNA identification.
    Sun Y; Buhler J
    Comput Syst Bioinformatics Conf; 2008; 7():145-56. PubMed ID: 19642276
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Efficient known ncRNA search including pseudoknots.
    Yuan C; Sun Y
    BMC Bioinformatics; 2013; 14 Suppl 2(Suppl 2):S25. PubMed ID: 23369049
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework.
    Katoh K; Toh H
    BMC Bioinformatics; 2008 Apr; 9():212. PubMed ID: 18439255
    [TBL] [Abstract][Full Text] [Related]  

  • 8. TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences.
    Harmanci AO; Sharma G; Mathews DH
    BMC Bioinformatics; 2011 Apr; 12():108. PubMed ID: 21507242
    [TBL] [Abstract][Full Text] [Related]  

  • 9. ncRNA consensus secondary structure derivation using grammar strings.
    Achawanantakun R; Sun Y; Takyar SS
    J Bioinform Comput Biol; 2011 Apr; 9(2):317-37. PubMed ID: 21523935
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Structural alignment of RNA with triple helix structure.
    Wong TK; Yiu SM
    J Comput Biol; 2012 Apr; 19(4):365-78. PubMed ID: 22468707
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences.
    Chikkagoudar S; Livesay DR; Roshan U
    Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W59-63. PubMed ID: 20522510
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A local multiple alignment method for detection of non-coding RNA sequences.
    Tabei Y; Asai K
    Bioinformatics; 2009 Jun; 25(12):1498-505. PubMed ID: 19376823
    [TBL] [Abstract][Full Text] [Related]  

  • 13. FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing.
    Underwood JG; Uzilov AV; Katzman S; Onodera CS; Mainzer JE; Mathews DH; Lowe TM; Salama SR; Haussler D
    Nat Methods; 2010 Dec; 7(12):995-1001. PubMed ID: 21057495
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data.
    Lu ZJ; Yip KY; Wang G; Shou C; Hillier LW; Khurana E; Agarwal A; Auerbach R; Rozowsky J; Cheng C; Kato M; Miller DM; Slack F; Snyder M; Waterston RH; Reinke V; Gerstein MB
    Genome Res; 2011 Feb; 21(2):276-85. PubMed ID: 21177971
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Classification of ncRNAs using position and size information in deep sequencing data.
    Erhard F; Zimmer R
    Bioinformatics; 2010 Sep; 26(18):i426-32. PubMed ID: 20823303
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Sequence-based heuristics for faster annotation of non-coding RNA families.
    Weinberg Z; Ruzzo WL
    Bioinformatics; 2006 Jan; 22(1):35-9. PubMed ID: 16267089
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A comparative genome-wide study of ncRNAs in trypanosomatids.
    Doniger T; Katz R; Wachtel C; Michaeli S; Unger R
    BMC Genomics; 2010 Nov; 11():615. PubMed ID: 21050447
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Robust and accurate prediction of noncoding RNAs from aligned sequences.
    Saito Y; Sato K; Sakakibara Y
    BMC Bioinformatics; 2010 Oct; 11 Suppl 7(Suppl 7):S3. PubMed ID: 21106125
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Deep forest ensemble learning for classification of alignments of non-coding RNA sequences based on multi-view structure representations.
    Li Y; Zhang Q; Liu Z; Wang C; Han S; Ma Q; Du W
    Brief Bioinform; 2021 Jul; 22(4):. PubMed ID: 33367506
    [TBL] [Abstract][Full Text] [Related]  

  • 20. RNAspa: a shortest path approach for comparative prediction of the secondary structure of ncRNA molecules.
    Horesh Y; Doniger T; Michaeli S; Unger R
    BMC Bioinformatics; 2007 Oct; 8():366. PubMed ID: 17908318
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.