201 related articles for article (PubMed ID: 25255224)
1. Analysis of the relationship between genomic GC Content and patterns of base usage, codon usage and amino acid usage in prokaryotes: similar GC content adopts similar compositional frequencies regardless of the phylogenetic lineages.
Zhou HQ; Ning LW; Zhang HX; Guo FB
PLoS One; 2014; 9(9):e107319. PubMed ID: 25255224
[TBL] [Abstract][Full Text] [Related]
2. Seven GC-rich microbial genomes adopt similar codon usage patterns regardless of their phylogenetic lineages.
Chen LL; Zhang CT
Biochem Biophys Res Commun; 2003 Jun; 306(1):310-7. PubMed ID: 12788106
[TBL] [Abstract][Full Text] [Related]
3. Amino acid usage is asymmetrically biased in AT- and GC-rich microbial genomes.
Bohlin J; Brynildsrud O; Vesth T; Skjerve E; Ussery DW
PLoS One; 2013; 8(7):e69878. PubMed ID: 23922837
[TBL] [Abstract][Full Text] [Related]
4. Across bacterial phyla, distantly-related genomes with similar genomic GC content have similar patterns of amino acid usage.
Lightfield J; Fram NR; Ely B
PLoS One; 2011 Mar; 6(3):e17677. PubMed ID: 21423704
[TBL] [Abstract][Full Text] [Related]
5. Quantifying the species-specificity in genomic signatures, synonymous codon choice, amino acid usage and G+C content.
Sandberg R; Bränden CI; Ernberg I; Cöster J
Gene; 2003 Jun; 311():35-42. PubMed ID: 12853136
[TBL] [Abstract][Full Text] [Related]
6. Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content.
Singer GA; Hickey DA
Gene; 2003 Oct; 317(1-2):39-47. PubMed ID: 14604790
[TBL] [Abstract][Full Text] [Related]
7. A novel common triplet profile for GC-rich prokaryotic genomes.
Zhang SH; Wang L
Genomics; 2011 May; 97(5):330-1. PubMed ID: 21324351
[No Abstract] [Full Text] [Related]
8. A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes.
Knight RD; Freeland SJ; Landweber LF
Genome Biol; 2001; 2(4):RESEARCH0010. PubMed ID: 11305938
[TBL] [Abstract][Full Text] [Related]
9. GC-Content of Synonymous Codons Profoundly Influences Amino Acid Usage.
Li J; Zhou J; Wu Y; Yang S; Tian D
G3 (Bethesda); 2015 Aug; 5(10):2027-36. PubMed ID: 26248983
[TBL] [Abstract][Full Text] [Related]
10. Compositional correlation studies among the three different codon positions in 12 bacterial genomes.
Majumdar S; Gupta SK; Sundararajan VS; Ghosh TC
Biochem Biophys Res Commun; 1999 Dec; 266(1):66-71. PubMed ID: 10581166
[TBL] [Abstract][Full Text] [Related]
11. Compositional dynamics of guanine and cytosine content in prokaryotic genomes.
Hu J; Zhao X; Zhang Z; Yu J
Res Microbiol; 2007 May; 158(4):363-70. PubMed ID: 17449227
[TBL] [Abstract][Full Text] [Related]
12. The genome of Campylobacter jejuni: codon and amino acid usage.
Fuglsang A
APMIS; 2003 Jun; 111(6):605-18. PubMed ID: 12969016
[TBL] [Abstract][Full Text] [Related]
13. CodonO: codon usage bias analysis within and across genomes.
Angellotti MC; Bhuiyan SB; Chen G; Wan XF
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W132-6. PubMed ID: 17537810
[TBL] [Abstract][Full Text] [Related]
14. The mystery of two straight lines in bacterial genome statistics.
Gorban AN; Zinovyev AY
Bull Math Biol; 2007 Oct; 69(7):2429-42. PubMed ID: 17577600
[TBL] [Abstract][Full Text] [Related]
15. GC content-independent amino acid patterns in bacteria and archaea.
Schmidt A; Rzanny M; Schmidt A; Hagen M; Schütze E; Kothe E
J Basic Microbiol; 2012 Apr; 52(2):195-205. PubMed ID: 21780150
[TBL] [Abstract][Full Text] [Related]
16. Study of completed archaeal genomes and proteomes: hypothesis of strong mutational AT pressure existed in their common predecessor.
Khrustalev VV; Barkovsky EV
Genomics Proteomics Bioinformatics; 2010 Mar; 8(1):22-32. PubMed ID: 20451159
[TBL] [Abstract][Full Text] [Related]
17. HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes.
Garcia-Vallve S; Guzman E; Montero MA; Romeu A
Nucleic Acids Res; 2003 Jan; 31(1):187-9. PubMed ID: 12519978
[TBL] [Abstract][Full Text] [Related]
18. Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes.
Wan XF; Xu D; Kleinhofs A; Zhou J
BMC Evol Biol; 2004 Jun; 4():19. PubMed ID: 15222899
[TBL] [Abstract][Full Text] [Related]
19. Inferring parameters shaping amino acid usage in prokaryotic genomes via Bayesian MCMC methods.
Naya H; Gianola D; Romero H; Urioste JI; Musto H
Mol Biol Evol; 2006 Jan; 23(1):203-11. PubMed ID: 16162860
[TBL] [Abstract][Full Text] [Related]
20. Mitochondrial phylogenomics of early land plants: mitigating the effects of saturation, compositional heterogeneity, and codon-usage bias.
Liu Y; Cox CJ; Wang W; Goffinet B
Syst Biol; 2014 Nov; 63(6):862-78. PubMed ID: 25070972
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
