BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

12370 related articles for article (PubMed ID: 25260700)

  • 1. HTSeq--a Python framework to work with high-throughput sequencing data.
    Anders S; Pyl PT; Huber W
    Bioinformatics; 2015 Jan; 31(2):166-9. PubMed ID: 25260700
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Analysing high-throughput sequencing data in Python with HTSeq 2.0.
    Putri GH; Anders S; Pyl PT; Pimanda JE; Zanini F
    Bioinformatics; 2022 May; 38(10):2943-2945. PubMed ID: 35561197
    [TBL] [Abstract][Full Text] [Related]  

  • 3. htseq-clip: a toolset for the preprocessing of eCLIP/iCLIP datasets.
    Sahadevan S; Sekaran T; Ashaf N; Fritz M; Hentze MW; Huber W; Schwarzl T
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36394253
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Rcount: simple and flexible RNA-Seq read counting.
    Schmid MW; Grossniklaus U
    Bioinformatics; 2015 Feb; 31(3):436-7. PubMed ID: 25322836
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Omics Pipe: a community-based framework for reproducible multi-omics data analysis.
    Fisch KM; Meißner T; Gioia L; Ducom JC; Carland TM; Loguercio S; Su AI
    Bioinformatics; 2015 Jun; 31(11):1724-8. PubMed ID: 25637560
    [TBL] [Abstract][Full Text] [Related]  

  • 6. svist4get: a simple visualization tool for genomic tracks from sequencing experiments.
    Egorov AA; Sakharova EA; Anisimova AS; Dmitriev SE; Gladyshev VN; Kulakovskiy IV
    BMC Bioinformatics; 2019 Mar; 20(1):113. PubMed ID: 30841857
    [TBL] [Abstract][Full Text] [Related]  

  • 7. TSSV: a tool for characterization of complex allelic variants in pure and mixed genomes.
    Anvar SY; van der Gaag KJ; van der Heijden JW; Veltrop MH; Vossen RH; de Leeuw RH; Breukel C; Buermans HP; Verbeek JS; de Knijff P; den Dunnen JT; Laros JF
    Bioinformatics; 2014 Jun; 30(12):1651-9. PubMed ID: 24532718
    [TBL] [Abstract][Full Text] [Related]  

  • 8. piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing.
    Han BW; Wang W; Zamore PD; Weng Z
    Bioinformatics; 2015 Feb; 31(4):593-5. PubMed ID: 25342065
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Pybedtools: a flexible Python library for manipulating genomic datasets and annotations.
    Dale RK; Pedersen BS; Quinlan AR
    Bioinformatics; 2011 Dec; 27(24):3423-4. PubMed ID: 21949271
    [TBL] [Abstract][Full Text] [Related]  

  • 10. CrossMap: a versatile tool for coordinate conversion between genome assemblies.
    Zhao H; Sun Z; Wang J; Huang H; Kocher JP; Wang L
    Bioinformatics; 2014 Apr; 30(7):1006-7. PubMed ID: 24351709
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Seq2pathway: an R/Bioconductor package for pathway analysis of next-generation sequencing data.
    Wang B; Cunningham JM; Yang XH
    Bioinformatics; 2015 Sep; 31(18):3043-5. PubMed ID: 25979472
    [TBL] [Abstract][Full Text] [Related]  

  • 12. jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator.
    Nell LA
    Mol Ecol Resour; 2020 Jul; 20(4):1132-1140. PubMed ID: 32320523
    [TBL] [Abstract][Full Text] [Related]  

  • 13. htsint: a Python library for sequencing pipelines that combines data through gene set generation.
    Richards AJ; Herrel A; Bonneaud C
    BMC Bioinformatics; 2015 Sep; 16():307. PubMed ID: 26399714
    [TBL] [Abstract][Full Text] [Related]  

  • 14. annonex2embl: automatic preparation of annotated DNA sequences for bulk submissions to ENA.
    Gruenstaeudl M
    Bioinformatics; 2020 Jun; 36(12):3841-3848. PubMed ID: 32227202
    [TBL] [Abstract][Full Text] [Related]  

  • 15. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.
    Liao Y; Smyth GK; Shi W
    Bioinformatics; 2014 Apr; 30(7):923-30. PubMed ID: 24227677
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Plastid: nucleotide-resolution analysis of next-generation sequencing and genomics data.
    Dunn JG; Weissman JS
    BMC Genomics; 2016 Nov; 17(1):958. PubMed ID: 27875984
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A Python package for parsing, validating, mapping and formatting sequence variants using HGVS nomenclature.
    Hart RK; Rico R; Hare E; Garcia J; Westbrook J; Fusaro VA
    Bioinformatics; 2015 Jan; 31(2):268-70. PubMed ID: 25273102
    [TBL] [Abstract][Full Text] [Related]  

  • 18. pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods.
    Behdenna A; Colange M; Haziza J; Gema A; Appé G; Azencott CA; Nordor A
    BMC Bioinformatics; 2023 Dec; 24(1):459. PubMed ID: 38057718
    [TBL] [Abstract][Full Text] [Related]  

  • 19. orfipy: a fast and flexible tool for extracting ORFs.
    Singh U; Wurtele ES
    Bioinformatics; 2021 Sep; 37(18):3019-3020. PubMed ID: 33576786
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Pygenprop: a Python library for programmatic exploration and comparison of organism genome properties.
    Bergstrand LH; Neufeld JD; Doxey AC
    Bioinformatics; 2019 Dec; 35(23):5063-5065. PubMed ID: 31240307
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 619.