354 related articles for article (PubMed ID: 25261520)
1. Performance comparison of Illumina and ion torrent next-generation sequencing platforms for 16S rRNA-based bacterial community profiling.
Salipante SJ; Kawashima T; Rosenthal C; Hoogestraat DR; Cummings LA; Sengupta DJ; Harkins TT; Cookson BT; Hoffman NG
Appl Environ Microbiol; 2014 Dec; 80(24):7583-91. PubMed ID: 25261520
[TBL] [Abstract][Full Text] [Related]
2. Impact of DNA Sequencing and Analysis Methods on 16S rRNA Gene Bacterial Community Analysis of Dairy Products.
Xue Z; Kable ME; Marco ML
mSphere; 2018 Oct; 3(5):. PubMed ID: 30333179
[TBL] [Abstract][Full Text] [Related]
3. A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome.
Allali I; Arnold JW; Roach J; Cadenas MB; Butz N; Hassan HM; Koci M; Ballou A; Mendoza M; Ali R; Azcarate-Peril MA
BMC Microbiol; 2017 Sep; 17(1):194. PubMed ID: 28903732
[TBL] [Abstract][Full Text] [Related]
4. Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steers.
Myer PR; Kim M; Freetly HC; Smith TPL
J Microbiol Methods; 2016 Aug; 127():132-140. PubMed ID: 27282101
[TBL] [Abstract][Full Text] [Related]
5. 16S rRNA gene sequencing of mock microbial populations- impact of DNA extraction method, primer choice and sequencing platform.
Fouhy F; Clooney AG; Stanton C; Claesson MJ; Cotter PD
BMC Microbiol; 2016 Jun; 16(1):123. PubMed ID: 27342980
[TBL] [Abstract][Full Text] [Related]
6. Optimisation of methods for bacterial skin microbiome investigation: primer selection and comparison of the 454 versus MiSeq platform.
Castelino M; Eyre S; Moat J; Fox G; Martin P; Ho P; Upton M; Barton A
BMC Microbiol; 2017 Jan; 17(1):23. PubMed ID: 28109256
[TBL] [Abstract][Full Text] [Related]
7. A 16S rRNA gene sequencing and analysis protocol for the Illumina MiniSeq platform.
Pichler M; Coskun ÖK; Ortega-Arbulú AS; Conci N; Wörheide G; Vargas S; Orsi WD
Microbiologyopen; 2018 Dec; 7(6):e00611. PubMed ID: 29575567
[TBL] [Abstract][Full Text] [Related]
8. Bioinformatic strategies to address limitations of 16rRNA short-read amplicons from different sequencing platforms.
Bailén M; Bressa C; Larrosa M; González-Soltero R
J Microbiol Methods; 2020 Feb; 169():105811. PubMed ID: 31857143
[TBL] [Abstract][Full Text] [Related]
9. Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification.
Wagner J; Coupland P; Browne HP; Lawley TD; Francis SC; Parkhill J
BMC Microbiol; 2016 Nov; 16(1):274. PubMed ID: 27842515
[TBL] [Abstract][Full Text] [Related]
10. Different next generation sequencing platforms produce different microbial profiles and diversity in cystic fibrosis sputum.
Hahn A; Sanyal A; Perez GF; Colberg-Poley AM; Campos J; Rose MC; Pérez-Losada M
J Microbiol Methods; 2016 Nov; 130():95-99. PubMed ID: 27609714
[TBL] [Abstract][Full Text] [Related]
11. Comparison of different hypervariable regions of 16S rRNA for taxonomic profiling of vaginal microbiota using next-generation sequencing.
Sirichoat A; Sankuntaw N; Engchanil C; Buppasiri P; Faksri K; Namwat W; Chantratita W; Lulitanond V
Arch Microbiol; 2021 Apr; 203(3):1159-1166. PubMed ID: 33221964
[TBL] [Abstract][Full Text] [Related]
12. Species classifier choice is a key consideration when analysing low-complexity food microbiome data.
Walsh AM; Crispie F; O'Sullivan O; Finnegan L; Claesson MJ; Cotter PD
Microbiome; 2018 Mar; 6(1):50. PubMed ID: 29554948
[TBL] [Abstract][Full Text] [Related]
13. A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform.
de Muinck EJ; Trosvik P; Gilfillan GD; Hov JR; Sundaram AYM
Microbiome; 2017 Jul; 5(1):68. PubMed ID: 28683838
[TBL] [Abstract][Full Text] [Related]
14. Analysis, optimization and verification of Illumina-generated 16S rRNA gene amplicon surveys.
Nelson MC; Morrison HG; Benjamino J; Grim SL; Graf J
PLoS One; 2014; 9(4):e94249. PubMed ID: 24722003
[TBL] [Abstract][Full Text] [Related]
15. Comparison of Illumina MiSeq and the Ion Torrent PGM and S5 platforms for whole-genome sequencing of picornaviruses and caliciviruses.
Marine RL; Magaña LC; Castro CJ; Zhao K; Montmayeur AM; Schmidt A; Diez-Valcarce M; Ng TFF; Vinjé J; Burns CC; Nix WA; Rota PA; Oberste MS
J Virol Methods; 2020 Jun; 280():113865. PubMed ID: 32302601
[TBL] [Abstract][Full Text] [Related]
16. Pipeline for amplifying and analyzing amplicons of the V1-V3 region of the 16S rRNA gene.
Allen HK; Bayles DO; Looft T; Trachsel J; Bass BE; Alt DP; Bearson SM; Nicholson T; Casey TA
BMC Res Notes; 2016 Aug; 9():380. PubMed ID: 27485508
[TBL] [Abstract][Full Text] [Related]
17. Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution.
Matsuo Y; Komiya S; Yasumizu Y; Yasuoka Y; Mizushima K; Takagi T; Kryukov K; Fukuda A; Morimoto Y; Naito Y; Okada H; Bono H; Nakagawa S; Hirota K
BMC Microbiol; 2021 Jan; 21(1):35. PubMed ID: 33499799
[TBL] [Abstract][Full Text] [Related]
18. Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota.
Heikema AP; Horst-Kreft D; Boers SA; Jansen R; Hiltemann SD; de Koning W; Kraaij R; de Ridder MAJ; van Houten CB; Bont LJ; Stubbs AP; Hays JP
Genes (Basel); 2020 Sep; 11(9):. PubMed ID: 32967250
[TBL] [Abstract][Full Text] [Related]
19. Bacterial metabarcoding by 16S rRNA gene ion torrent amplicon sequencing.
Fantini E; Gianese G; Giuliano G; Fiore A
Methods Mol Biol; 2015; 1231():77-90. PubMed ID: 25343859
[TBL] [Abstract][Full Text] [Related]
20. Generating amplicon reads for microbial community assessment with next-generation sequencing.
Gołębiewski M; Tretyn A
J Appl Microbiol; 2020 Feb; 128(2):330-354. PubMed ID: 31299126
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]