216 related articles for article (PubMed ID: 25262155)
1. LongTarget: a tool to predict lncRNA DNA-binding motifs and binding sites via Hoogsteen base-pairing analysis.
He S; Zhang H; Liu H; Zhu H
Bioinformatics; 2015 Jan; 31(2):178-86. PubMed ID: 25262155
[TBL] [Abstract][Full Text] [Related]
2. LncRNA/DNA binding analysis reveals losses and gains and lineage specificity of genomic imprinting in mammals.
Liu H; Shang X; Zhu H
Bioinformatics; 2017 May; 33(10):1431-1436. PubMed ID: 28052924
[TBL] [Abstract][Full Text] [Related]
3.
Wen Y; Wu Y; Xu B; Lin J; Zhu H
Comput Struct Biotechnol J; 2022; 20():3347-3350. PubMed ID: 35832611
[TBL] [Abstract][Full Text] [Related]
4. Genome-wide computational analysis of potential long noncoding RNA mediated DNA:DNA:RNA triplexes in the human genome.
Jalali S; Singh A; Maiti S; Scaria V
J Transl Med; 2017 Sep; 15(1):186. PubMed ID: 28865451
[TBL] [Abstract][Full Text] [Related]
5. LDAP: a web server for lncRNA-disease association prediction.
Lan W; Li M; Zhao K; Liu J; Wu FX; Pan Y; Wang J
Bioinformatics; 2017 Feb; 33(3):458-460. PubMed ID: 28172495
[TBL] [Abstract][Full Text] [Related]
6. iLoc-lncRNA: predict the subcellular location of lncRNAs by incorporating octamer composition into general PseKNC.
Su ZD; Huang Y; Zhang ZY; Zhao YW; Wang D; Chen W; Chou KC; Lin H
Bioinformatics; 2018 Dec; 34(24):4196-4204. PubMed ID: 29931187
[TBL] [Abstract][Full Text] [Related]
7. Genome-Wide Computational Analysis and Validation of Potential Long Noncoding RNA-Mediated DNA-DNA-RNA Triplexes in the Human Genome.
Jalali S; Singh A; Scaria V; Maiti S
Methods Mol Biol; 2021; 2254():61-71. PubMed ID: 33326070
[TBL] [Abstract][Full Text] [Related]
8. Distinct patterns of epigenetic marks and transcription factor binding sites across promoters of sense-intronic long noncoding RNAs.
Ghosh S; Sati S; Sengupta S; Scaria V
J Genet; 2015 Mar; 94(1):17-25. PubMed ID: 25846873
[TBL] [Abstract][Full Text] [Related]
9. Detection of RNA-DNA binding sites in long noncoding RNAs.
Kuo CC; Hänzelmann S; Sentürk Cetin N; Frank S; Zajzon B; Derks JP; Akhade VS; Ahuja G; Kanduri C; Grummt I; Kurian L; Costa IG
Nucleic Acids Res; 2019 Apr; 47(6):e32. PubMed ID: 30698727
[TBL] [Abstract][Full Text] [Related]
10. Pipelines for cross-species and genome-wide prediction of long noncoding RNA binding.
Lin J; Wen Y; He S; Yang X; Zhang H; Zhu H
Nat Protoc; 2019 Mar; 14(3):795-818. PubMed ID: 30700807
[TBL] [Abstract][Full Text] [Related]
11. Computational recognition for long non-coding RNA (lncRNA): Software and databases.
Yotsukura S; duVerle D; Hancock T; Natsume-Kitatani Y; Mamitsuka H
Brief Bioinform; 2017 Jan; 18(1):9-27. PubMed ID: 26839320
[TBL] [Abstract][Full Text] [Related]
12. LncVar: Deciphering Genetic Variations Associated with Long Noncoding Genes.
Chen X; Hao Y; Cui Y; Fan Z; Chen R
Methods Mol Biol; 2019; 1870():189-198. PubMed ID: 30539556
[TBL] [Abstract][Full Text] [Related]
13. Aberrant expression of long noncoding RNAs in cumulus cells isolated from PCOS patients.
Huang X; Hao C; Bao H; Wang M; Dai H
J Assist Reprod Genet; 2016 Jan; 33(1):111-21. PubMed ID: 26650608
[TBL] [Abstract][Full Text] [Related]
14. Mapping Chromatin Occupancy of
Hwang J; Kang X; Wolf C; Touma M
Cells; 2023 Dec; 12(24):. PubMed ID: 38132125
[TBL] [Abstract][Full Text] [Related]
15. Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes.
Alam T; Medvedeva YA; Jia H; Brown JB; Lipovich L; Bajic VB
PLoS One; 2014; 9(10):e109443. PubMed ID: 25275320
[TBL] [Abstract][Full Text] [Related]
16. COME: a robust coding potential calculation tool for lncRNA identification and characterization based on multiple features.
Hu L; Xu Z; Hu B; Lu ZJ
Nucleic Acids Res; 2017 Jan; 45(1):e2. PubMed ID: 27608726
[TBL] [Abstract][Full Text] [Related]
17. [Analysis of orthologous lncRNAs in humans and mice and their species-specific epigenetic target genes].
Jiang YY; Zhu H; Zhang H
Nan Fang Yi Ke Da Xue Xue Bao; 2018 Jun; 38(6):731-735. PubMed ID: 29997097
[TBL] [Abstract][Full Text] [Related]
18. LncRNA ontology: inferring lncRNA functions based on chromatin states and expression patterns.
Li Y; Chen H; Pan T; Jiang C; Zhao Z; Wang Z; Zhang J; Xu J; Li X
Oncotarget; 2015 Nov; 6(37):39793-805. PubMed ID: 26485761
[TBL] [Abstract][Full Text] [Related]
19. Comprehensive analysis of long noncoding RNA (lncRNA)-chromatin interactions reveals lncRNA functions dependent on binding diverse regulatory elements.
Zhang G; Lan Y; Xie A; Shi J; Zhao H; Xu L; Zhu S; Luo T; Zhao T; Xiao Y; Li X
J Biol Chem; 2019 Oct; 294(43):15613-15622. PubMed ID: 31484726
[TBL] [Abstract][Full Text] [Related]
20. Prediction of the RBP binding sites on lncRNAs using the high-order nucleotide encoding convolutional neural network.
Zhang SW; Wang Y; Zhang XX; Wang JQ
Anal Biochem; 2019 Oct; 583():113364. PubMed ID: 31323206
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
