BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

580 related articles for article (PubMed ID: 25262207)

  • 1. Comprehensive analysis of DNA methylation data with RnBeads.
    Assenov Y; Müller F; Lutsik P; Walter J; Lengauer T; Bock C
    Nat Methods; 2014 Nov; 11(11):1138-1140. PubMed ID: 25262207
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RnBeads 2.0: comprehensive analysis of DNA methylation data.
    Müller F; Scherer M; Assenov Y; Lutsik P; Walter J; Lengauer T; Bock C
    Genome Biol; 2019 Mar; 20(1):55. PubMed ID: 30871603
    [TBL] [Abstract][Full Text] [Related]  

  • 3. epiGBS: reference-free reduced representation bisulfite sequencing.
    van Gurp TP; Wagemaker NC; Wouters B; Vergeer P; Ouborg JN; Verhoeven KJ
    Nat Methods; 2016 Apr; 13(4):322-4. PubMed ID: 26855363
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data.
    Liao WW; Yen MR; Ju E; Hsu FM; Lam L; Chen PY
    BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S11. PubMed ID: 26680022
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Whole-Genome Bisulfite Sequencing for the Methylation Analysis of Insect Genomes.
    Gatzmann F; Lyko F
    Methods Mol Biol; 2019; 1858():141-156. PubMed ID: 30414116
    [TBL] [Abstract][Full Text] [Related]  

  • 6. BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing.
    Lutsik P; Feuerbach L; Arand J; Lengauer T; Walter J; Bock C
    Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W551-6. PubMed ID: 21565797
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Methy-Pipe: an integrated bioinformatics pipeline for whole genome bisulfite sequencing data analysis.
    Jiang P; Sun K; Lun FM; Guo AM; Wang H; Chan KC; Chiu RW; Lo YM; Sun H
    PLoS One; 2014; 9(6):e100360. PubMed ID: 24945300
    [TBL] [Abstract][Full Text] [Related]  

  • 8. BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing.
    Bock C; Reither S; Mikeska T; Paulsen M; Walter J; Lengauer T
    Bioinformatics; 2005 Nov; 21(21):4067-8. PubMed ID: 16141249
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Whole-Genome Bisulfite Sequencing for the Analysis of Genome-Wide DNA Methylation and Hydroxymethylation Patterns at Single-Nucleotide Resolution.
    Kernaleguen M; Daviaud C; Shen Y; Bonnet E; Renault V; Deleuze JF; Mauger F; Tost J
    Methods Mol Biol; 2018; 1767():311-349. PubMed ID: 29524144
    [TBL] [Abstract][Full Text] [Related]  

  • 10. BS-Seeker3: ultrafast pipeline for bisulfite sequencing.
    Huang KYY; Huang YJ; Chen PY
    BMC Bioinformatics; 2018 Apr; 19(1):111. PubMed ID: 29614954
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Targeted bisulfite sequencing for biomarker discovery.
    Morselli M; Farrell C; Rubbi L; Fehling HL; Henkhaus R; Pellegrini M
    Methods; 2021 Mar; 187():13-27. PubMed ID: 32755621
    [TBL] [Abstract][Full Text] [Related]  

  • 12. BSPAT: a fast online tool for DNA methylation co-occurrence pattern analysis based on high-throughput bisulfite sequencing data.
    Hu K; Ting AH; Li J
    BMC Bioinformatics; 2015 Jul; 16():220. PubMed ID: 26163275
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Bioinformatic Analysis of Methylation Patterns Using Bisulfite Sequencing Data.
    Asselman J
    Methods Mol Biol; 2019; 1858():157-175. PubMed ID: 30414117
    [TBL] [Abstract][Full Text] [Related]  

  • 14. BISMA--fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences.
    Rohde C; Zhang Y; Reinhardt R; Jeltsch A
    BMC Bioinformatics; 2010 May; 11():230. PubMed ID: 20459626
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Analysis and Visualization Tool for Targeted Amplicon Bisulfite Sequencing on Ion Torrent Sequencers.
    Pabinger S; Ernst K; Pulverer W; Kallmeyer R; Valdes AM; Metrustry S; Katic D; Nuzzo A; Kriegner A; Vierlinger K; Weinhaeusel A
    PLoS One; 2016; 11(7):e0160227. PubMed ID: 27467908
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Bisulfite Conversion of DNA: Performance Comparison of Different Kits and Methylation Quantitation of Epigenetic Biomarkers that Have the Potential to Be Used in Non-Invasive Prenatal Testing.
    Leontiou CA; Hadjidaniel MD; Mina P; Antoniou P; Ioannides M; Patsalis PC
    PLoS One; 2015; 10(8):e0135058. PubMed ID: 26247357
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Bioinformatics Analysis of DNA Methylation Through Bisulfite Sequencing Data.
    Sang F
    Methods Mol Biol; 2021; 2198():441-450. PubMed ID: 32822049
    [TBL] [Abstract][Full Text] [Related]  

  • 18. DNA Methylation Data Analysis Using Msuite.
    Liu X; Yuan P; Sun K
    Methods Mol Biol; 2023; 2624():1-6. PubMed ID: 36723805
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genome-wide DNA methylation maps in follicular lymphoma cells determined by methylation-enriched bisulfite sequencing.
    Choi JH; Li Y; Guo J; Pei L; Rauch TA; Kramer RS; Macmil SL; Wiley GB; Bennett LB; Schnabel JL; Taylor KH; Kim S; Xu D; Sreekumar A; Pfeifer GP; Roe BA; Caldwell CW; Bhalla KN; Shi H
    PLoS One; 2010 Sep; 5(9):. PubMed ID: 20927367
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Tagmentation-based whole-genome bisulfite sequencing.
    Wang Q; Gu L; Adey A; Radlwimmer B; Wang W; Hovestadt V; Bähr M; Wolf S; Shendure J; Eils R; Plass C; Weichenhan D
    Nat Protoc; 2013 Oct; 8(10):2022-32. PubMed ID: 24071908
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 29.