BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

792 related articles for article (PubMed ID: 25268896)

  • 1. Interplay of LNA and 2'-O-methyl RNA in the structure and thermodynamics of RNA hybrid systems: a molecular dynamics study using the revised AMBER force field and comparison with experimental results.
    Yildirim I; Kierzek E; Kierzek R; Schatz GC
    J Phys Chem B; 2014 Dec; 118(49):14177-87. PubMed ID: 25268896
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Atomistic investigation of the effect of incremental modification of deoxyribose sugars by locked nucleic acid (β-D-LNA and α-L-LNA) moieties on the structures and thermodynamics of DNA-RNA hybrid duplexes.
    Suresh G; Priyakumar UD
    J Phys Chem B; 2014 Jun; 118(22):5853-63. PubMed ID: 24845216
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Structures, dynamics, and stabilities of fully modified locked nucleic acid (β-D-LNA and α-L-LNA) duplexes in comparison to pure DNA and RNA duplexes.
    Suresh G; Priyakumar UD
    J Phys Chem B; 2013 May; 117(18):5556-64. PubMed ID: 23617391
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Inclusion of methoxy groups inverts the thermodynamic stabilities of DNA-RNA hybrid duplexes: A molecular dynamics simulation study.
    Suresh G; Priyakumar UD
    J Mol Graph Model; 2015 Sep; 61():150-9. PubMed ID: 26254870
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Insights into structure, dynamics and hydration of locked nucleic acid (LNA) strand-based duplexes from molecular dynamics simulations.
    Pande V; Nilsson L
    Nucleic Acids Res; 2008 Mar; 36(5):1508-16. PubMed ID: 18203740
    [TBL] [Abstract][Full Text] [Related]  

  • 6. NMR studies of fully modified locked nucleic acid (LNA) hybrids: solution structure of an LNA:RNA hybrid and characterization of an LNA:DNA hybrid.
    Nielsen KE; Rasmussen J; Kumar R; Wengel J; Jacobsen JP; Petersen M
    Bioconjug Chem; 2004; 15(3):449-57. PubMed ID: 15149171
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Conformation of formacetal and 3'-thioformacetal nucleotide linkers and stability of their antisense RNA.DNA hybrid duplexes.
    Rice JS; Gao X
    Biochemistry; 1997 Jan; 36(2):399-411. PubMed ID: 9003193
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The influence of locked nucleic acid residues on the thermodynamic properties of 2'-O-methyl RNA/RNA heteroduplexes.
    Kierzek E; Ciesielska A; Pasternak K; Mathews DH; Turner DH; Kierzek R
    Nucleic Acids Res; 2005; 33(16):5082-93. PubMed ID: 16155181
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Comparison of the thermodynamics and base-pair dynamics of a full LNA:DNA duplex and of the isosequential DNA:DNA duplex.
    Bruylants G; Boccongelli M; Snoussi K; Bartik K
    Biochemistry; 2009 Sep; 48(35):8473-82. PubMed ID: 19670874
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Effects of salt, polyethylene glycol, and locked nucleic acids on the thermodynamic stabilities of consecutive terminal adenosine mismatches in RNA duplexes.
    Gu X; Nguyen MT; Overacre A; Seaton S; Schroeder SJ
    J Phys Chem B; 2013 Apr; 117(13):3531-40. PubMed ID: 23480443
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The conformations of locked nucleic acids (LNA).
    Petersen M; Nielsen CB; Nielsen KE; Jensen GA; Bondensgaard K; Singh SK; Rajwanshi VK; Koshkin AA; Dahl BM; Wengel J; Jacobsen JP
    J Mol Recognit; 2000; 13(1):44-53. PubMed ID: 10679896
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Contributions of stacking, preorganization, and hydrogen bonding to the thermodynamic stability of duplexes between RNA and 2'-O-methyl RNA with locked nucleic acids.
    Kierzek E; Pasternak A; Pasternak K; Gdaniec Z; Yildirim I; Turner DH; Kierzek R
    Biochemistry; 2009 May; 48(20):4377-87. PubMed ID: 19348504
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Molecular dynamics simulations of a r(GA12G).d(CT12C) hybrid duplex.
    Fritsch V; Wolf RM
    J Biomol Struct Dyn; 1994 Jun; 11(6):1161-74. PubMed ID: 7524540
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Effect of locked nucleic acid modifications on the thermal stability of noncanonical DNA structure.
    Bhattacharyya J; Maiti S; Muhuri S; Nakano S; Miyoshi D; Sugimoto N
    Biochemistry; 2011 Aug; 50(34):7414-25. PubMed ID: 21774551
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Effect of LNA- and OMeN-modified oligonucleotide probes on the stability and discrimination of mismatched base pairs of duplexes.
    Yan Y; Yan J; Piao X; Zhang T; Guan Y
    J Biosci; 2012 Jun; 37(2):233-41. PubMed ID: 22581329
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Molecular structure of the core-modified siRNA duplexes containing diastereomeric pair of [C6'(R)-OH]- versus [C6'(S)-OH]-carba-LNAs suggests a model for RNAi action.
    Plashkevych O; Chattopadhyaya J
    Nucleosides Nucleotides Nucleic Acids; 2011 Nov; 30(11):815-25. PubMed ID: 22060548
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Efficient stabilization of phosphodiester (PO), phosphorothioate (PS), and 2'-O-methoxy (2'-OMe) DNA·RNA hybrid duplexes by amino sugars.
    Charles I; Davis E; Arya DP
    Biochemistry; 2012 Jul; 51(27):5496-505. PubMed ID: 22639785
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The structure of LNA:DNA hybrids from molecular dynamics simulations: the effect of locked nucleotides.
    Ivanova A; Rösch N
    J Phys Chem A; 2007 Sep; 111(38):9307-19. PubMed ID: 17718546
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A chemical synthesis of LNA-2,6-diaminopurine riboside, and the influence of 2'-O-methyl-2,6-diaminopurine and LNA-2,6-diaminopurine ribosides on the thermodynamic properties of 2'-O-methyl RNA/RNA heteroduplexes.
    Pasternak A; Kierzek E; Pasternak K; Turner DH; Kierzek R
    Nucleic Acids Res; 2007; 35(12):4055-63. PubMed ID: 17567607
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Structural properties of DNA:RNA duplexes containing 2'-O-methyl and 2'-S-methyl substitutions: a molecular dynamics investigation.
    Venkateswarlu D; Lind KE; Mohan V; Manoharan M; Ferguson DM
    Nucleic Acids Res; 1999 May; 27(10):2189-95. PubMed ID: 10219092
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 40.