These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
219 related articles for article (PubMed ID: 25273068)
21. Mind the gaps: evidence of bias in estimates of multiple sequence alignments. Golubchik T; Wise MJ; Easteal S; Jermiin LS Mol Biol Evol; 2007 Nov; 24(11):2433-42. PubMed ID: 17709332 [TBL] [Abstract][Full Text] [Related]
22. The effect of the guide tree on multiple sequence alignments and subsequent phylogenetic analyses. Nelesen S; Liu K; Zhao D; Linder CR; Warnow T Pac Symp Biocomput; 2008; ():25-36. PubMed ID: 18229674 [TBL] [Abstract][Full Text] [Related]
25. Evaluating Statistical Multiple Sequence Alignment in Comparison to Other Alignment Methods on Protein Data Sets. Nute M; Saleh E; Warnow T Syst Biol; 2019 May; 68(3):396-411. PubMed ID: 30329135 [TBL] [Abstract][Full Text] [Related]
26. Specific alignment of structured RNA: stochastic grammars and sequence annealing. Bradley RK; Pachter L; Holmes I Bioinformatics; 2008 Dec; 24(23):2677-83. PubMed ID: 18796475 [TBL] [Abstract][Full Text] [Related]
27. Automated whole-genome multiple alignment of rat, mouse, and human. Brudno M; Poliakov A; Salamov A; Cooper GM; Sidow A; Rubin EM; Solovyev V; Batzoglou S; Dubchak I Genome Res; 2004 Apr; 14(4):685-92. PubMed ID: 15060011 [TBL] [Abstract][Full Text] [Related]
28. Versatile and open software for comparing large genomes. Kurtz S; Phillippy A; Delcher AL; Smoot M; Shumway M; Antonescu C; Salzberg SL Genome Biol; 2004; 5(2):R12. PubMed ID: 14759262 [TBL] [Abstract][Full Text] [Related]
30. GenomeVISTA--an integrated software package for whole-genome alignment and visualization. Poliakov A; Foong J; Brudno M; Dubchak I Bioinformatics; 2014 Sep; 30(18):2654-5. PubMed ID: 24860159 [TBL] [Abstract][Full Text] [Related]
31. G-Anchor: a novel approach for whole-genome comparative mapping utilizing evolutionary conserved DNA sequences. Lenis VPE; Swain M; Larkin DM Gigascience; 2018 May; 7(5):. PubMed ID: 29618053 [TBL] [Abstract][Full Text] [Related]
32. MergeAlign: improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignments. Collingridge PW; Kelly S BMC Bioinformatics; 2012 May; 13():117. PubMed ID: 22646090 [TBL] [Abstract][Full Text] [Related]
33. GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality. Wu TD; Reeder J; Lawrence M; Becker G; Brauer MJ Methods Mol Biol; 2016; 1418():283-334. PubMed ID: 27008021 [TBL] [Abstract][Full Text] [Related]
34. Improving the alignment quality of consistency based aligners with an evaluation function using synonymous protein words. Lin HN; Notredame C; Chang JM; Sung TY; Hsu WL PLoS One; 2011; 6(12):e27872. PubMed ID: 22163274 [TBL] [Abstract][Full Text] [Related]
35. Simultaneous alignment of short reads against multiple genomes. Schneeberger K; Hagmann J; Ossowski S; Warthmann N; Gesing S; Kohlbacher O; Weigel D Genome Biol; 2009; 10(9):R98. PubMed ID: 19761611 [TBL] [Abstract][Full Text] [Related]
36. Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities. Roshan U; Chikkagoudar S; Livesay DR BMC Bioinformatics; 2008 Jan; 9():61. PubMed ID: 18226231 [TBL] [Abstract][Full Text] [Related]
38. Phylogenetic assessment of alignments reveals neglected tree signal in gaps. Dessimoz C; Gil M Genome Biol; 2010; 11(4):R37. PubMed ID: 20370897 [TBL] [Abstract][Full Text] [Related]
39. Genomic multiple sequence alignments: refinement using a genetic algorithm. Wang C; Lefkowitz EJ BMC Bioinformatics; 2005 Aug; 6():200. PubMed ID: 16086841 [TBL] [Abstract][Full Text] [Related]
40. seq-seq-pan: building a computational pan-genome data structure on whole genome alignment. Jandrasits C; Dabrowski PW; Fuchs S; Renard BY BMC Genomics; 2018 Jan; 19(1):47. PubMed ID: 29334898 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]