These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

202 related articles for article (PubMed ID: 25273103)

  • 1. The RNA shapes studio.
    Janssen S; Giegerich R
    Bioinformatics; 2015 Feb; 31(3):423-5. PubMed ID: 25273103
    [TBL] [Abstract][Full Text] [Related]  

  • 2. pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows.
    Reeder J; Steffen P; Giegerich R
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W320-4. PubMed ID: 17478505
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Faster computation of exact RNA shape probabilities.
    Janssen S; Giegerich R
    Bioinformatics; 2010 Mar; 26(5):632-9. PubMed ID: 20080511
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction.
    Reeder J; Giegerich R
    Bioinformatics; 2005 Sep; 21(17):3516-23. PubMed ID: 16020472
    [TBL] [Abstract][Full Text] [Related]  

  • 5. RNA-related tools on the Bielefeld Bioinformatics Server.
    Sczyrba A; Krüger J; Mersch H; Kurtz S; Giegerich R
    Nucleic Acids Res; 2003 Jul; 31(13):3767-70. PubMed ID: 12824414
    [TBL] [Abstract][Full Text] [Related]  

  • 6. RNA Movies 2: sequential animation of RNA secondary structures.
    Kaiser A; Krüger J; Evers DJ
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W330-4. PubMed ID: 17567618
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Heuristic RNA pseudoknot prediction including intramolecular kissing hairpins.
    Sperschneider J; Datta A; Wise MJ
    RNA; 2011 Jan; 17(1):27-38. PubMed ID: 21098139
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Evaluating the predictability of conformational switching in RNA.
    Voss B; Meyer C; Giegerich R
    Bioinformatics; 2004 Jul; 20(10):1573-82. PubMed ID: 14962925
    [TBL] [Abstract][Full Text] [Related]  

  • 9. FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space.
    Chen X; He SM; Bu D; Zhang F; Wang Z; Chen R; Gao W
    Bioinformatics; 2008 Sep; 24(18):1994-2001. PubMed ID: 18586700
    [TBL] [Abstract][Full Text] [Related]  

  • 10. RNAshapes: an integrated RNA analysis package based on abstract shapes.
    Steffen P; Voss B; Rehmsmeier M; Reeder J; Giegerich R
    Bioinformatics; 2006 Feb; 22(4):500-3. PubMed ID: 16357029
    [TBL] [Abstract][Full Text] [Related]  

  • 11. INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints.
    Busch A; Backofen R
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W310-3. PubMed ID: 17452349
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Sequence-structure relations of biopolymers.
    Barrett C; Huang FW; Reidys CM
    Bioinformatics; 2017 Feb; 33(3):382-389. PubMed ID: 28171628
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Abstract shapes of RNA.
    Giegerich R; Voss B; Rehmsmeier M
    Nucleic Acids Res; 2004; 32(16):4843-51. PubMed ID: 15371549
    [TBL] [Abstract][Full Text] [Related]  

  • 14. New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation.
    Antczak M; Popenda M; Zok T; Zurkowski M; Adamiak RW; Szachniuk M
    Bioinformatics; 2018 Apr; 34(8):1304-1312. PubMed ID: 29236971
    [TBL] [Abstract][Full Text] [Related]  

  • 15. iFoldRNA v2: folding RNA with constraints.
    Krokhotin A; Houlihan K; Dokholyan NV
    Bioinformatics; 2015 Sep; 31(17):2891-3. PubMed ID: 25910700
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Abstract shape analysis of RNA.
    Janssen S; Giegerich R
    Methods Mol Biol; 2014; 1097():215-45. PubMed ID: 24639162
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Locomotif: from graphical motif description to RNA motif search.
    Reeder J; Reeder J; Giegerich R
    Bioinformatics; 2007 Jul; 23(13):i392-400. PubMed ID: 17646322
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Ambivalent covariance models.
    Janssen S; Giegerich R
    BMC Bioinformatics; 2015 May; 16():178. PubMed ID: 26017195
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction.
    Janssen S; Schudoma C; Steger G; Giegerich R
    BMC Bioinformatics; 2011 Nov; 12():429. PubMed ID: 22051375
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Predicting pseudoknotted structures across two RNA sequences.
    Sperschneider J; Datta A; Wise MJ
    Bioinformatics; 2012 Dec; 28(23):3058-65. PubMed ID: 23044552
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.